FC931639
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: SNRPA_XENLA (U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17 Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 3 Query: 75 PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAKK 344 PG + P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFVE+ +E+QA A +SLQ KI Q + I++AKK Sbjct: 192 PGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: SNRPA_PIG (U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 12 GLNPXXXXXXXXTPPLSQIPY---PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 344 G+ P PP + P PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++AKK Sbjct: 168 GMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: SNRPA_MOUSE (U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 12 GLNPXXXXXXXXTPPLSQIPY---PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 344 G+ P PP + P PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++AKK Sbjct: 173 GMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: SNRPA_HUMAN (U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 12 GLNPXXXXXXXXTPPLSQIPY---PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 344 G+ P PP + P PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++AKK Sbjct: 168 GMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: SNRPA_BOVIN (U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.651e-16 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 12 GLNPXXXXXXXXTPPLSQIPY---PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 344 G+ P PP + P PG P + PPN+ILF+ N+P +T + L M F+QFPGFKEVR+V + IAFVE+ +E+QA A +LQ KI Q + I++AKK Sbjct: 168 GMIPPPGLAPGQLPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: SNRPA_DROME (U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster GN=snf PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.825e-15 Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 3 Query: 75 PGGAKSVIPEAPA--PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 344 P A++ P A PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ E+Q+ A ++LQ KI + IT+AKK Sbjct: 124 PSSAENSNPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: RU2B_MOUSE (U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15 Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 3 Query: 81 GAKSVIPEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 344 G + P+ P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK Sbjct: 136 GTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: RU2B_HUMAN (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.310e-15 Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 3 Query: 99 PEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 344 P+ P PPN ILF+ N+P +T M L M F+QFPGFKEVR+V + IAFVE+ ++ QA A +LQ KI + ITYAKK Sbjct: 142 PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: RU2B_DICDI (U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.495e-14 Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 3 Query: 114 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 329 PPN LFV+N+P M L M FSQF GFKEV MVE+K GIAF+E+ DE+++ AM +LQ K+ ++ ++ Sbjct: 164 PPNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMV 235
BLAST of FC931639 vs. ExPASy Swiss-Prot
Match: RU1A_SCHPO (U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe GN=usp102 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.001e-13 Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 3 Query: 87 KSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 344 KS I E PPN +L +QN+P + L F F GF+EVRMV + GIAFVEY + +ATVA + + Q+ +T+A+K Sbjct: 162 KSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFARK 247 The following BLAST results are available for this feature:
BLAST of FC931639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931639 ID=FC931639; Name=FC931639; organism=Citrus clementina; type=EST; length=526bpback to top |