FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig451 contig Ccv1_Contig451:201..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.860e-42
Identity = 85/97 (87.63%), Postives = 86/97 (88.66%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK+INPDE           ILSGEGNEKVQDL
Sbjct:  301 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDL 397          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 2.860e-42
Identity = 85/97 (87.63%), Postives = 86/97 (88.66%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK+INPDE           ILSGEGNEKVQDL
Sbjct:  301 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDL 397          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.322e-42
Identity = 84/97 (86.60%), Postives = 86/97 (88.66%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKS+VHDVVLVGGSTRIPKVQQLLQDFFNGKELCK+INPDE           ILSGEGNEKVQDL
Sbjct:  301 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDL 397          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 4.130e-41
Identity = 83/97 (85.57%), Postives = 85/97 (87.63%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            S ITRARFEELN+DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK+INPDE           ILSGEGNEKVQDL
Sbjct:  301 SPITRARFEELNIDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDL 397          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 9.202e-41
Identity = 81/97 (83.51%), Postives = 85/97 (87.63%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            S ITRARFEE+NMDLFRKCMEPVEKCLRDAKMDKSTVH++VLVGGSTRIPKVQQLLQDFFNGKELCK+INPDE           ILSGEGNEKVQDL
Sbjct:  301 SPITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKSTVHEIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDL 397          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.049e-39
Identity = 81/98 (82.65%), Postives = 85/98 (86.73%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQL-LQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQ+ + +FFNGKELCK+INPDE           ILSGEGNEKVQDL
Sbjct:  301 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQVAMTNFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDL 398          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.469e-38
Identity = 77/97 (79.38%), Postives = 84/97 (86.60%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +TITRARFEE+NMDLFRKCMEPVEKCLRDAK+DKS VH+VVLVGGSTRIPKV QLLQDFFNGKELCK+INPDE           ILSG+G+EKVQDL
Sbjct:  300 ATITRARFEEMNMDLFRKCMEPVEKCLRDAKIDKSQVHEVVLVGGSTRIPKVHQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGQGDEKVQDL 396          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.582e-38
Identity = 77/95 (81.05%), Postives = 82/95 (86.32%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ITRARFEELN+DLFRKCMEPVEKCLRDAKMDK+++ DVVLVGGSTRIPKVQQLL DFFNGKELCK+INPDE           ILSGEGNEKVQDL
Sbjct:  303 ITRARFEELNIDLFRKCMEPVEKCLRDAKMDKNSIDDVVLVGGSTRIPKVQQLLVDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDL 397          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_CHLRE (Heat shock 70 kDa protein OS=Chlamydomonas reinhardtii GN=HSP70 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.796e-36
Identity = 76/97 (78.35%), Postives = 81/97 (83.51%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL MDLFRKCM+PVEKCL DAKMDK TVHDVVLVGGSTRIPKVQQLLQDFFNGKEL K+INPDE           IL+GEG EKVQDL
Sbjct:  301 TSITRARFEELCMDLFRKCMDPVEKCLHDAKMDKMTVHDVVLVGGSTRIPKVQQLLQDFFNGKELNKSINPDEAVAYGAAVQAAILTGEGGEKVQDL 397          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.345e-36
Identity = 72/93 (77.42%), Postives = 81/93 (87.10%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEK 281
            +TITRARFEELNMDLF+KCM+PVEKCLRD+K+DK+ VH+VVLVGGSTRIPKVQQLLQDFFNGKELCK+INPDE           ILSGEGNE+
Sbjct:  300 TTITRARFEELNMDLFKKCMDPVEKCLRDSKIDKAQVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNER 392          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP72_SOLLC2.860e-4287.63Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP71_ARATH2.860e-4287.63Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP7C_PETHY8.322e-4286.60Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP7E_SPIOL4.130e-4185.57Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP72_ARATH9.202e-4183.51Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP71_SOLLC5.049e-3982.65Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP70_SOYBN1.469e-3879.38Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP73_ARATH5.582e-3881.05Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP70_CHLRE1.796e-3678.35Heat shock 70 kDa protein OS=Chlamydomonas reinhar... [more]
HSP70_DAUCA2.345e-3677.42Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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