FC931646

Overview
NameFC931646
Unique NameFC931646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931646 vs. ExPASy Swiss-Prot
Match: NCKX6_RAT (Sodium/potassium/calcium exchanger 6 OS=Rattus norvegicus GN=Slc24a6 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 62/192 (32.29%), Postives = 101/192 (52.60%), Query Frame = 2
Query:   86 KISKAWEFPVTTILKLTIPETDP----LEWNRFYSSANIILCPLLLLYACSSFLPFDHPIAFLLPNTHFPLWFIVXXXXXXXXXXXXIV--ETEAPKTEQMPVVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVMQ 643
            K+ K  + PV  +L LT+P  DP      W R  +   +++ PL+L+    S +   + I  LLP     +W +V                 +E P+   +    + F+ S  WI+  A E++N L ++G +  L + +LGLT+LAWGNS+GD  +D  +A+ G+P MA + CF G +FN+LVG+G   ++Q
Sbjct:  325 KLLKVAKLPVEFLLLLTVPVVDPDKDDRNWKRPLNCLQLVISPLVLVLTLQSGVYGIYEIGGLLP-----VWAVVVIVGTALASVTFFATSNSEPPRLHWL-FAFLGFLTSALWINAAATEVVNILRSLGVVFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNILVGVGLGCLLQ 510          
BLAST of FC931646 vs. ExPASy Swiss-Prot
Match: CCX4_ARATH (Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 67/195 (34.36%), Postives = 107/195 (54.87%), Query Frame = 2
Query:   71 AQVCGKISKAWEFPVTTILKLTIPETDPLEWNRFYSSANIILCPLLLLYACSSFLPFDHPIAFLLPNTHFPLWFIVXXXXXXXXXXXXIVETEAPKTEQM---PVVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILGLTVLAWGNSVGDLVADVAVAKAGHPA--MAMAGCFAGPMFNMLVGLGSALVM 640
            + +C KI+   E P+T   +LTIP  +   W++ Y+ A++ L P+LL +  SS    D  +   +      + + +               TE  +  Q+   P V+  F+MS+ W   +A EL+  L   G I  +  +ILGLTVLAWGNS+GDLV+++A++  G     +A++GC+AGPMFN LVGLG ++ +
Sbjct:  384 SSLCSKITSLLETPLTVPRRLTIPLIEEDSWSKTYAVASVSLAPVLLSFLWSS--QDDTSLQARI------VAYFIGIAIGSTLGYLAFKNTEPDRPPQIYLIPWVLGGFIMSIVWFYMIANELVALLVTFGGIYGINPSILGLTVLAWGNSMGDLVSNIALSMNGGDGVQIALSGCYAGPMFNTLVGLGMSMFL 570          
BLAST of FC931646 vs. ExPASy Swiss-Prot
Match: NCKX6_MOUSE (Sodium/potassium/calcium exchanger 6 OS=Mus musculus GN=Slc24a6 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 62/192 (32.29%), Postives = 101/192 (52.60%), Query Frame = 2
Query:   86 KISKAWEFPVTTILKLTIPETDP----LEWNRFYSSANIILCPLLLLYACSSFLPFDHPIAFLLPNTHFPLWFIVXXXXXXXXXXXXIVET--EAPKTEQMPVVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVMQ 643
            ++ K  + PV  +L LT+P  DP      W R  +   +++ PL+L+    S +   + I  LLP     +W +V               +  E P+   +    + F+ S  WI+  A E++N L ++G I  L + +LGLT+LAWGNS+GD  +D  +A+ G+P MA + CF G +FN+LVG+G   ++Q
Sbjct:  325 RVLKVVKLPVEFLLLLTVPVVDPDKDDRNWKRPLNCLQLVISPLVLVLTLQSGVYGIYEIGGLLP-----VWAVVVIVGTALASVTFFATSNREPPRLHWL-FAFLGFLTSALWINAAATEVVNILRSLGVIFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNILVGVGLGCLLQ 510          
BLAST of FC931646 vs. ExPASy Swiss-Prot
Match: NCKX6_HUMAN (Sodium/potassium/calcium exchanger 6 OS=Homo sapiens GN=SLC24A6 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.922e-23
Identity = 59/191 (30.89%), Postives = 100/191 (52.36%), Query Frame = 2
Query:   86 KISKAWEFPVTTILKLTIPETDP----LEWNRFYSSANIILCPLLLLYACSSFLPFDHPIAFLLPNTHFPLWFIVXXXXXXXXXXXXIVETEA-PKTEQMPVVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVMQ 643
            K  K ++ PV  +L LT+P  DP      W R  +  ++++ PL+++    S     + I  L+P     +W +V               +++ P         + F+ S  WI+  A E++N L ++G +  L + +LGLT+LAWGNS+GD  +D  +A+ G+P MA + CF G +FN+LVG+G   ++Q
Sbjct:  325 KALKVFKLPVEFLLLLTVPVVDPDKDDQNWKRPLNCLHLVISPLVVVLTLQSGTYGVYEIGGLVP-----VWVVVVIAGTALASVTFFATSDSQPPRLHWLFAFLGFLTSALWINAAATEVVNILRSLGVVFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNILVGVGLGCLLQ 510          
BLAST of FC931646 vs. ExPASy Swiss-Prot
Match: CCX3_ARATH (Cation/calcium exchanger 3 OS=Arabidopsis thaliana GN=CCX3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 63/188 (33.51%), Postives = 99/188 (52.66%), Query Frame = 2
Query:   80 CGKISKAWEFPVTTILKLTIPETDPLEWNRFYSSANIILCPLLLLYACSSFLPFDHPIAFLLPNTHFPLWFIVXXXXXXXXXXXXIVETEAPKTEQMPVVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILGLTVLAWGNSVGDLVADVAVAKAGHPA--MAMAGCFAGPMFNMLVGLGSALV 637
            C K +   E P+T   +LTIP  +   W++ Y+ A++ L P+LL    SS       ++       +  + +V                  P+   +P V+  F+MS+ W   +A EL+  L   G I  +  +IL LTVLAWGNS+GDLV+++A+   G     +A++GC+AGPMFN LVGLG +++
Sbjct:  386 CTKFTSLLEIPLTIPRRLTIPSVEEDTWSKTYAVASVSLAPVLLASLWSS----QDDVSLQACGVAY-FFSVVIGSTLGFLAYKNTEPDHPPRRFLIPWVLGGFIMSIVWFYMIANELVALLVTFGEIYGINPSILALTVLAWGNSMGDLVSNIALTMNGGDGVQIALSGCYAGPMFNTLVGLGMSML 568          
BLAST of FC931646 vs. ExPASy Swiss-Prot
Match: NCX7_CAEEL (Putative sodium/calcium exchanger 7 OS=Caenorhabditis elegans GN=ncx-7 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 57/171 (33.33%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  122 ILKLTIPETDPLEWNRFYSSANIILCPLLLLYACSSFLPFDHPIAFLLPNTHFPLWFIVXXXXXXXXXXXXIVETEA---PKTEQMPVVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLG 625
            + KLTIP  + + W++  +  +   CP  LL++   FL          P +  P  ++             +V TE    PK  +       F+MS+ WI  ++ E++N +  +G +  +   +LGLT+LAW NS+GDL+ADV+V K G+P MAMA    GP+FN+L+G G
Sbjct:  435 LFKLTIPLNE-MSWSKPLTLLHAFTCPAFLLFSIQFFLE--------TPFSGSPGLWVYGLAVSIVLAILIMVFTELSVQPKYYKEIYSYSGFIMSIAWIYLISSEVVNVVTMLGVVSRVSHEVLGLTILAWSNSIGDLIADVSVVKQGYPRMAMAAAIGGPLFNLLMGFG 596          
BLAST of FC931646 vs. ExPASy Swiss-Prot
Match: NCX6_CAEEL (Putative sodium/calcium exchanger 6 OS=Caenorhabditis elegans GN=ncx-6 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 58/173 (33.53%), Postives = 93/173 (53.76%), Query Frame = 2
Query:  122 ILKLTIPETDPLEWNRFYSSANIILCPLLLLYACS--SFLPFDHPIAFLLPNTHFPLWF---IVXXXXXXXXXXXXIVETEAPKTEQMPVVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLG 625
            + KLTIP ++   W++  +    ++CP+ LL+     S  PF        PN+   LW    I+             +  E P  + + +    F+MS+ WI  ++ E++N +  +G +  +   +LGLT+LAW NS+GDL+ADV+VAK G+P MAMA    G +FN+L+G G
Sbjct:  353 LFKLTIPHSEQ-PWSKPITLLQCLICPVFLLFCIQVCSISPF--------PNSP-GLWMYGLILSVLLTAAVLFFTELHKEPPFYKSL-ISYAGFLMSIAWIYLISSEVVNVVTMLGVVSRVSHEVLGLTILAWSNSIGDLIADVSVAKQGYPRMAMAAAIGGQLFNLLIGFG 514          
BLAST of FC931646 vs. ExPASy Swiss-Prot
Match: YDL6_SCHPO (Putative cation exchanger C3A12.06c OS=Schizosaccharomyces pombe GN=SPAC3A12.06c PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  374 VVIIAFVMSVFWISTVAGELLNCLAAIGTILELPSAILGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLG 625
            V  I FV+ + WIST+A E++  L A+G I  L  +ILGLTV A GNS+ DL+AD+ +A++G P MAM G F GP  N+L+G+G
Sbjct:  584 VSFIGFVLGIIWISTIANEVVGILRALGVIFNLNESILGLTVFAAGNSLSDLIADIMIARSGFPEMAMGGVFGGPTLNILIGIG 667          
The following BLAST results are available for this feature:
BLAST of FC931646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NCKX6_RAT6.606e-2432.29Sodium/potassium/calcium exchanger 6 OS=Rattus nor... [more]
CCX4_ARATH6.606e-2434.36Cation/calcium exchanger 4 OS=Arabidopsis thaliana... [more]
NCKX6_MOUSE1.127e-2332.29Sodium/potassium/calcium exchanger 6 OS=Mus muscul... [more]
NCKX6_HUMAN1.922e-2330.89Sodium/potassium/calcium exchanger 6 OS=Homo sapie... [more]
CCX3_ARATH9.539e-2333.51Cation/calcium exchanger 3 OS=Arabidopsis thaliana... [more]
NCX7_CAEEL2.350e-2133.33Putative sodium/calcium exchanger 7 OS=Caenorhabdi... [more]
NCX6_CAEEL1.166e-2033.53Putative sodium/calcium exchanger 6 OS=Caenorhabdi... [more]
YDL6_SCHPO2.872e-1951.19Putative cation exchanger C3A12.06c OS=Schizosacch... [more]
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Properties
Property NameValue
Genbank descriptionC34107E01EF PostHarvP1 Citrus clementina cDNA clone C34107E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931646 ID=FC931646; Name=FC931646; organism=Citrus clementina; type=EST; length=697bp
GACCGAAGATTGTGAGATTGGACAAGTCAAAGGTTTGGAGCAATTGGAGA
AAAATGATGCCTCTGGATTTGCTCAAGTTTGTGGGAAGATATCAAAGGCA
TGGGAGTTTCCTGTTACTACTATTTTGAAGCTCACAATTCCTGAAACTGA
TCCTTTGGAATGGAACCGGTTCTACTCATCTGCAAATATCATTTTGTGCC
CTTTATTGCTTTTATATGCTTGCAGCTCATTCTTGCCTTTTGATCATCCA
ATAGCTTTCCTCCTTCCAAACACACATTTTCCTCTGTGGTTCATAGTACT
CTTGGCTAGCTTTTCTCTTGCACTTCTTCACTTCATAGTGGAAACAGAAG
CCCCAAAGACTGAGCAAATGCCCGTGGTGATCATTGCATTTGTGATGAGT
GTATTTTGGATATCAACTGTTGCTGGGGAGCTGCTGAATTGTTTAGCTGC
AATTGGAACAATTCTTGAATTGCCTTCTGCTATACTGGGGCTCACGGTAC
TTGCATGGGGCAACTCTGTGGGAGATCTTGTTGCTGATGTCGCAGTGGCC
AAAGCAGGTCATCCAGCAATGGCAATGGCTGGGTGCTTTGCTGGGCCAAT
GTTTAACATGCTTGTTGGGCTCGGATCAGCTTTGGTGATGCAACAACCAA
TTCTTATCCAAAGCTTATGAGCTGCATTTCACTTTGGTATATCACTG
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