FC931647
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: RPN12_YEAST (26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae GN=RPN12 PE=1 SV=3) HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18 Identity = 64/202 (31.68%), Postives = 101/202 (50.00%), Query Frame = 1 Query: 112 LVSELHGAIERKQFDAANDLLSRSKRALLMQNALIPTSSTPPQL----VVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSE 705 L L A E + A LL K L+ N LIP S + +++ +++LE+GALASI+ + F Y+ QL+P+Y H SE D ++SK+ S ++ FH+ L+ L + ++EDD+ + YP++L+R LMEGSY K W +S +F F+++L IR+EIA +E Sbjct: 7 LTKSLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNH------KLSESD----KKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIK----NLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTE 194
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17 Identity = 62/198 (31.31%), Postives = 96/198 (48.48%), Query Frame = 1 Query: 115 VSELHGAIERKQFDAANDLLSRSKRALLMQNALIPTSSTPPQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708 ++ L +RK ++A L + K L QN +PTS + AR V E G L SI+ D + F RY Q+ PFY H L +S+ +TG S A FHT LE + +++ E D +++ + LE+N+MEG++DKV +S P +F F +++ +RNEIA C+E+ Sbjct: 6 LNHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDK--EKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFY----HDSL---------VPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLF-----ERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP--EFSYFMKIVMSMVRNEIATCAEK 181
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16 Identity = 68/203 (33.50%), Postives = 99/203 (48.77%), Query Frame = 1 Query: 112 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708 + +L G RK + L R K LL N L PT+ T Q ++LAR +LE+GA SI + D F RY QL+ +Y + LP ++ ++ G S A FHT LE L ++ + IK+PV LE+ LMEGSY+KV+ +P+E + F ++L+ TIR+EIA C E+ Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELE------RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYAFFIDILLDTIRDEIAGCIEK 184
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16 Identity = 68/203 (33.50%), Postives = 99/203 (48.77%), Query Frame = 1 Query: 112 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708 + +L G RK + L R K LL N L PT+ T Q ++LAR +LE+GA SI + D F RY QL+ +Y + LP ++ ++ G S A FHT LE L ++ + IK+PV LE+ LMEGSY+KV+ +P+E + F ++L+ TIR+EIA C E+ Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELE------RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDEIAGCIEK 184
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 67/203 (33.00%), Postives = 99/203 (48.77%), Query Frame = 1 Query: 112 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708 + +L G RK + L R K LL N L PT+ T Q ++LAR + E+GA SI + D F RY QL+ +Y + LP ++ ++ G S A FHT LE L + ++ + IK+PV LE+ LMEGSY+KV+ +P+E + F ++L+ TIR+EIA C E+ Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAK------DIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDEIAGCIEK 184
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15 Identity = 64/181 (35.36%), Postives = 92/181 (50.83%), Query Frame = 1 Query: 172 LSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708 L R K LL N L PT+ T Q ++LAR +LE+GA SI D F RY QL+ +Y + LP ++ ++ G S A FHT LE L + ++ + IK+PV LE+ LMEGSY+KV+ +P+E + F ++L+ TIR+EIA C E+ Sbjct: 23 LGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILCKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAK------DIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDEIAGCIEK 184
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11 Identity = 48/155 (30.97%), Postives = 88/155 (56.77%), Query Frame = 1 Query: 244 VVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708 +VLAR++LEL +L SI+ D F R + QL+ +Y + +PS +++ +I G + ++ FH+ +E L+E +L D++ IK+P+ +E+++ EGSY+K+ + VPSE + +F ++L +I+ +IA CSE+ Sbjct: 58 LVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSI----IAPSTLEY------QIIGLNLMRLLAKHKTSEFHSEIE-LIEFNNL------DNSFIKFPLLVEKSITEGSYNKIIQSRSG--VPSEYYQVFLDILADSIKEDIANCSEK 193 The following BLAST results are available for this feature:
BLAST of FC931647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931647 ID=FC931647; Name=FC931647; organism=Citrus clementina; type=EST; length=719bpback to top |