FC931647

Overview
NameFC931647
Unique NameFC931647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15366 contig Ccv1_Contig15366:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: RPN12_YEAST (26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae GN=RPN12 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 64/202 (31.68%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  112 LVSELHGAIERKQFDAANDLLSRSKRALLMQNALIPTSSTPPQL----VVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSE 705
            L   L  A E   + A   LL   K  L+  N LIP  S    +    +++ +++LE+GALASI+  +   F  Y+ QL+P+Y    H        SE D    ++SK+         S  ++  FH+ L+ L +       ++EDD+ + YP++L+R LMEGSY K W   +S      +F  F+++L   IR+EIA  +E
Sbjct:    7 LTKSLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNH------KLSESD----KKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIK----NLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTE 194          
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 62/198 (31.31%), Postives = 96/198 (48.48%), Query Frame = 1
Query:  115 VSELHGAIERKQFDAANDLLSRSKRALLMQNALIPTSSTPPQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708
            ++ L    +RK ++A    L + K  L  QN  +PTS    +    AR V E G L SI+  D + F RY  Q+ PFY    H  L           +S+   +TG       S    A FHT LE + +++       E D  +++ + LE+N+MEG++DKV    +S   P  +F  F  +++  +RNEIA C+E+
Sbjct:    6 LNHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDK--EKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFY----HDSL---------VPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLF-----ERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP--EFSYFMKIVMSMVRNEIATCAEK 181          
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 68/203 (33.50%), Postives = 99/203 (48.77%), Query Frame = 1
Query:  112 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708
            +  +L G   RK        + L R K  LL  N L PT+ T    Q ++LAR +LE+GA  SI + D   F RY  QL+ +Y  +    LP          ++   ++ G       S    A FHT LE       L    ++ +  IK+PV LE+ LMEGSY+KV+       +P+E +  F ++L+ TIR+EIA C E+
Sbjct:    1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELE------RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYAFFIDILLDTIRDEIAGCIEK 184          
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 68/203 (33.50%), Postives = 99/203 (48.77%), Query Frame = 1
Query:  112 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708
            +  +L G   RK        + L R K  LL  N L PT+ T    Q ++LAR +LE+GA  SI + D   F RY  QL+ +Y  +    LP          ++   ++ G       S    A FHT LE       L    ++ +  IK+PV LE+ LMEGSY+KV+       +P+E +  F ++L+ TIR+EIA C E+
Sbjct:    1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELE------RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDEIAGCIEK 184          
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 67/203 (33.00%), Postives = 99/203 (48.77%), Query Frame = 1
Query:  112 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708
            +  +L G   RK        + L R K  LL  N L PT+ T    Q ++LAR + E+GA  SI + D   F RY  QL+ +Y  +    LP          ++   ++ G       S    A FHT LE L  +       ++ +  IK+PV LE+ LMEGSY+KV+       +P+E +  F ++L+ TIR+EIA C E+
Sbjct:    1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAK------DIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDEIAGCIEK 184          
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 64/181 (35.36%), Postives = 92/181 (50.83%), Query Frame = 1
Query:  172 LSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708
            L R K  LL  N L PT+ T    Q ++LAR +LE+GA  SI   D   F RY  QL+ +Y  +    LP          ++   ++ G       S    A FHT LE L  +       ++ +  IK+PV LE+ LMEGSY+KV+       +P+E +  F ++L+ TIR+EIA C E+
Sbjct:   23 LGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILCKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAK------DIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDEIAGCIEK 184          
BLAST of FC931647 vs. ExPASy Swiss-Prot
Match: PSMD8_DICDI (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 48/155 (30.97%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  244 VVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNVLIGTIRNEIAXCSER 708
            +VLAR++LEL +L SI+  D   F R + QL+ +Y   +       +PS +++      +I G       +   ++ FH+ +E L+E  +L      D++ IK+P+ +E+++ EGSY+K+ +      VPSE + +F ++L  +I+ +IA CSE+
Sbjct:   58 LVLAREILELISLYSIKIKDIDSFERTFNQLKTYYYDYKSI----IAPSTLEY------QIIGLNLMRLLAKHKTSEFHSEIE-LIEFNNL------DNSFIKFPLLVEKSITEGSYNKIIQSRSG--VPSEYYQVFLDILADSIKEDIANCSEK 193          
The following BLAST results are available for this feature:
BLAST of FC931647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RPN12_YEAST1.491e-1831.6826S proteasome regulatory subunit RPN12 OS=Sacchar... [more]
RPN12_SCHPO1.649e-1731.3126S proteasome regulatory subunit rpn12 OS=Schizos... [more]
PSMD8_PONAB1.396e-1633.5026S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_HUMAN2.380e-1633.5026S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_BOVIN1.181e-1533.0026S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_MOUSE1.543e-1535.3626S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_DICDI5.136e-1130.97Probable 26S proteasome non-ATPase regulatory subu... [more]
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Properties
Property NameValue
Genbank descriptionC34107E02EF PostHarvP1 Citrus clementina cDNA clone C34107E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931647 ID=FC931647; Name=FC931647; organism=Citrus clementina; type=EST; length=719bp
CGTCTCCGCCGTTTCAAATATTGCCTTCGTCCCAAATCGGCTAGGCTGCC
TCACTCCCTTTTAGCATTGTCCTGAACCCACACATCATCCACCATGTCCG
ATCTACAGTCCCTTGTGTCAGAGCTCCACGGTGCTATCGAGCGCAAACAA
TTCGATGCCGCCAACGACCTCCTCAGCCGTTCCAAGCGAGCTCTCCTTAT
GCAAAATGCCTTGATCCCAACTTCTTCCACACCTCCGCAGCTTGTCGTCC
TTGCCCGCCAAGTCCTCGAACTCGGAGCACTCGCCTCCATCCGCCAGACC
GACGCCCAGCTATTCACACGTTATTATCAGCAACTGCAGCCATTCTACGA
CCTCGAGAGACACGCTGGTCTGCCCGGGCAAAGCCCTTCGGAAGTTGACT
TTAGCACTAGTCAACGCAGCAAGATTACAGGACTGTATCTGCTTCTTCTT
TTGAGCATGGGCGACAGTGCCAACTTCCACACAGTGCTGGAGGGGTTAGT
GGAAGAGGCGAGCTTGAAGGGTGGCCATGTTGAGGATGATGCATGCATCA
AGTACCCCGTTGAGCTGGAGCGCAACTTGATGGAAGGAAGCTATGACAAG
GTGTGGAGGGAGACGAAGTCCGAGCGTGTTCCGTCGGAAGACTTTGGTCT
GTTTTCGAATGTTCTCATCGGCACCATTCGCAATGAAATCGCANGTTGCT
CAGAAAGGCCTACCCCTCC
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