FC931648

Overview
NameFC931648
Unique NameFC931648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15367 contig Ccv1_Contig15367:1..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL292_ARATH (60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 300
            MAKSKNHTAHNQS KA+KNGIKKP++HRHT T+GMDPKFLRNQRYARKHN  +G +A  E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60          
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL291_ARATH (60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 300
            MAKSKNHTAHNQS KA+KNGIKKP++HRHT T+GMDPKFLRNQRYARKHN   G +A  E
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60          
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL29_RAT (60S ribosomal protein L29 OS=Rattus norvegicus GN=Rpl29 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 273
            MAKSKNHT HNQS K ++NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51          
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL29_PIG (60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 PE=2 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 273
            MAKSKNHT HNQS K ++NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51          
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL29_MOUSE (60S ribosomal protein L29 OS=Mus musculus GN=Rpl29 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 273
            MAKSKNHT HNQS K ++NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51          
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL29_MACFA (60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 273
            MAKSKNHT HNQS K ++NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51          
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL29_HUMAN (60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 273
            MAKSKNHT HNQS K ++NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51          
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL29_BOVIN (60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 273
            MAKSKNHT HNQS K ++NGIKKP+  R+ S KG+DPKFLRN R+A+KHNK
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51          
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL29_DROME (60S ribosomal protein L29 OS=Drosophila melanogaster GN=RpL29 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAE 294
            MAKSKNHT HNQ+ KA++NGIK+P + RH ST GMD KFL NQRYARK N S   S +
Sbjct:    1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLSREESVK 58          
BLAST of FC931648 vs. ExPASy Swiss-Prot
Match: RL29_YEAST (60S ribosomal protein L29 OS=Saccharomyces cerevisiae GN=RPL29 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 1
Query:  121 MAKSKNHTAHNQSYKAYKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 258
            MAKSKNHTAHNQ+ KA++NGIKKPK +++ S KG+DPKF RN ++A
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46          
The following BLAST results are available for this feature:
BLAST of FC931648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL292_ARATH8.204e-2278.3360S ribosomal protein L29-2 OS=Arabidopsis thalian... [more]
RL291_ARATH8.204e-2278.3360S ribosomal protein L29-1 OS=Arabidopsis thalian... [more]
RL29_RAT1.499e-1570.5960S ribosomal protein L29 OS=Rattus norvegicus GN=... [more]
RL29_PIG1.499e-1570.5960S ribosomal protein L29 OS=Sus scrofa GN=RPL29 P... [more]
RL29_MOUSE1.499e-1570.5960S ribosomal protein L29 OS=Mus musculus GN=Rpl29... [more]
RL29_MACFA1.499e-1570.5960S ribosomal protein L29 OS=Macaca fascicularis G... [more]
RL29_HUMAN1.499e-1570.5960S ribosomal protein L29 OS=Homo sapiens GN=RPL29... [more]
RL29_BOVIN1.499e-1570.5960S ribosomal protein L29 OS=Bos taurus GN=RPL29 P... [more]
RL29_DROME3.691e-1465.5260S ribosomal protein L29 OS=Drosophila melanogast... [more]
RL29_YEAST2.025e-1267.3960S ribosomal protein L29 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC34107E03EF PostHarvP1 Citrus clementina cDNA clone C34107E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931648 ID=FC931648; Name=FC931648; organism=Citrus clementina; type=EST; length=541bp
GATCCCTGATTCGTCCCAAAACCCTAAACCTAACAGCAGCGTTAATTCTT
CCTCGCTTGTCTTTGCCGGCCATAACCCTGCTATCCTCAGTTGCTCATCC
CAAACCGATCCTTTTGAAAGATGGCCAAGTCGAAGAATCACACTGCCCAT
AACCAGTCTTACAAAGCCTACAAGAATGGAATCAAGAAACCCAAGAAGCA
CAGACACACTTCAACCAAAGGGATGGATCCTAAGTTTCTGAGGAATCAGA
GGTACGCAAGGAAGCATAACAAGAGTAACGGCGGATCCGCTGAGGAGGAA
TAAACGTTAAAGCCAAGTGTCTATTATTTTTATTTTACGAAAGCTGCTTG
TTTAGTCTGCTTTTGTTATGAAATACAATTTTGGTTGTATTGCGAACTAA
ATATGATTTCGTACCTTAGGTTATATTAGTTGTTTGCTCTTTATAACAAT
TGTCTAGGAATGTAGTGCCTTATAGCCTTCTTTGATATCAAGCTGGAGTT
TGCATTTTTTTTTAGGCTTCAATTCACTATGGATGAGGTAC
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