FC931649

Overview
NameFC931649
Unique NameFC931649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2884 contig Ccv1_Contig2884:16..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 55/132 (41.67%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  298 RARDTTQSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFRDG--PLVVFHRTVDDRXXXXXXXXXXXXXXXXXHVWLNVXVSLLIGV 687
            RA+ TTQS+ +T RPWR++LD+ A++ P    EA  HLK N+S FR NYA+ VLAI+FL L++HP+SM            LYF RD    +V+  + VDD+                  V  NV VSL+IG+
Sbjct:   35 RAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGL 166          
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 50/130 (38.46%), Postives = 67/130 (51.54%), Query Frame = 1
Query:  289 FLTRARDTTQSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFRDGPLVVFHRTVDDRXXXXXXXXXXXXXXXXXHVWLNVXVSLL 678
            +++RA+   +S  +TRRPW+ + D  ++T P    +A   +K NL  FR NYA+ VL ILFLSLL+HP S+            LYF RD PLVVF   +DDR                 H   N+  SLL
Sbjct:   21 YISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLL 150          
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  292 LTRARDTTQSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFRDGPLVVFHRTVDDR 594
            L+RA+   ++  +TRR WR + D H++  P  V +A   +K NL+ FR+NYA++VL ++F SL+WHP S+            LYF RD P+ +F   +DDR
Sbjct:   22 LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDR 122          
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PR1F4_ARATH (PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 42/131 (32.06%), Postives = 65/131 (49.62%), Query Frame = 1
Query:  292 LTRARDTTQSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFRDGPLVVFHRTVDDRXXXXXXXXXXXXXXXXXHVWLNVXVSLLIG 684
            ++RA+   +   +TRR WR + D+H+   P  V +    +K NL+ FR NYA+++L ++F SL+WHP S+            LYF RD PL VF   +DDR                 +   N+  +L+ G
Sbjct:   22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNIVAALMAG 152          
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PRA1D_ARATH (PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 41/132 (31.06%), Postives = 67/132 (50.76%), Query Frame = 1
Query:  292 LTRARDTTQSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFRDGPLVVFHRTVDDRXXXXXXXXXXXXXXXXXHVWLNVXVSLLIGV 687
            +T  ++T QS+    RPW   LD+ A + PSS+ +AT  + +NL+ FR+NY++I+  +L L+L+  P+++            LYF R+ PL +F  T+DD                   VWL    ++  GV
Sbjct:    6 ITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGVWLRALTTVGFGV 137          
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 46/104 (44.23%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  289 FLTRARDTTQSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFR--DGPLVVFHRTVDDR 594
            FL+R   + +   S RRPW +L+D  AI+RP S+ +A   ++RNL  F+VNY  IV  +L LSLL HP S+            LY FR  D PLVV  RT  DR
Sbjct:   32 FLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDR 135          
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  289 FLTRARDTTQSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFR--DGPLVVFHRTVDDR 594
            F+ +  +T ++  S RRPW +L D  A+++P S+ +A + +++N S F+VNY  +  AI+  SL+ HP S+            LY FR  D P+V+F RT  DR
Sbjct:   39 FINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDR 142          
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PR1F1_ARATH (PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 39/123 (31.71%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  316 QSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFRDGPLVVFHRTVDDRXXXXXXXXXXXXXXXXXHVWLNVXVSLLIG 684
            +S  +TRRPW+Q+LD+ +   P  +      ++ N   F+ NY ++VL  +FLSL+W+P S+            LYF RD PL VF R +D R                    LN+ V+++ G
Sbjct:   30 RSGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAG 152          
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  289 FLTRARDTTQSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFR--DGPLVVFHRTVDDR 594
            F +R   + +   S RRPW +L+D  ++ RP S+ +A   +++NL+ F+VNY  IV  +L  SL  HP+S+            LY FR  D PLVVF RT  DR
Sbjct:   29 FFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDR 132          
BLAST of FC931649 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  289 FLTRARDTTQSVFSTRRPWRQLLDIHAITRPSSVGEATIHLKRNLSSFRVNYAMIVLAILFLSLLWHPVSMXXXXXXXXXXXXLYFFR--DGPLVVFHRTVDDR 594
            FL+R   + +   S RRPW +L+D  +  RP S+ ++   +++NL+ F+VNY+ IV  +L  SLL HP S+            LY FR  D PLV+F R+  DR
Sbjct:   31 FLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDR 134          
The following BLAST results are available for this feature:
BLAST of FC931649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PRA1E_ARATH1.956e-2041.67PRA1 family protein E OS=Arabidopsis thaliana GN=P... [more]
PR1F2_ARATH4.078e-1838.46PRA1 family protein F2 OS=Arabidopsis thaliana GN=... [more]
PR1F3_ARATH2.024e-1739.60PRA1 family protein F3 OS=Arabidopsis thaliana GN=... [more]
PR1F4_ARATH1.004e-1632.06PRA1 family protein F4 OS=Arabidopsis thaliana GN=... [more]
PRA1D_ARATH7.198e-1531.06PRA1 family protein D OS=Arabidopsis thaliana GN=P... [more]
PR1B3_ARATH7.198e-1544.23PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B4_ARATH3.572e-1436.54PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1F1_ARATH7.958e-1431.71PRA1 family protein F1 OS=Arabidopsis thaliana GN=... [more]
PR1B1_ARATH1.357e-1339.42PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH5.158e-1338.46PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34107E04EF PostHarvP1 Citrus clementina cDNA clone C34107E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931649 ID=FC931649; Name=FC931649; organism=Citrus clementina; type=EST; length=692bp
GAACGATGCTAATTTTCCCAGCAAATATCGAAGCCAAAAGCATCAGCTTT
TAAACGAAGAGACCTCTCTCCCCTTGCACTCTCACACACTCTCAATTTCT
CTGCATCATCGTCATCCCATGACGCACAAATTTCATTTCAGATCTTCGAA
TTAGGGTTTCCTAAATTCTATTAGTTTCCAAAATTCACTCATTTCATTCA
TCACCCAATGTCTTCACAAGCTCCGCCTCACTACGGCTCCCTTCCGCCCA
CGTCAACCTCTCCAACCTACGTTCCCCCCACCACCGCGTTCCTCACGCGT
GCCAGGGACACCACCCAGTCCGTTTTCTCCACGCGTCGCCCATGGAGACA
ACTCCTCGACATCCACGCCATCACGCGCCCTTCCTCCGTCGGCGAAGCCA
CCATCCACCTAAAGCGGAACCTCTCCTCCTTTCGTGTTAATTACGCGATG
ATCGTCCTTGCCATCCTCTTTCTCAGCCTCTTGTGGCACCCGGTCTCAAT
GATTGTGTTCATAGTCGTCTTCATCGCCTGGTTCTTCCTTTACTTCTTTC
GCGACGGGCCATTGGTTGTATTCCATCGCACGGTGGATGACCGTGTCCTT
TTGGGAATTCTCGGCGTCGTCACGATTGTTTCGCTGGTATTGACGCACGT
GTGGTTGAACGTGNTGGTTTCACTCTTGATTGGGGTTTTCAT
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