FC931654

Overview
NameFC931654
Unique NameFC931654
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6138 contig Ccv1_Contig6138:116..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931654 vs. ExPASy Swiss-Prot
Match: FB84_ARATH (F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.882e-66
Identity = 133/224 (59.38%), Postives = 163/224 (72.77%), Query Frame = 2
Query:   29 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTXXXXXXXXXXXXXFSCSRSIKS----TEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWAMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYQLALCLHRGRGV 685
            MKQRTWP RS GSRF++L F      ++R  ++              S S S  S     E  DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG VR NLDKALDSFLKGA RGSTLAMVDAGL+YW   +KE A++LYR+A+ LGD  GQ NLGI+YLQ QP+N +EA+K L Q++  G+VRAQYQLALCLH GR V
Sbjct:    1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSNEFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRGGVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNLGIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVV 224          
The following BLAST results are available for this feature:
BLAST of FC931654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB84_ARATH1.882e-6659.38F-box protein At1g70590 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC34107E09EF PostHarvP1 Citrus clementina cDNA clone C34107E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931654 ID=FC931654; Name=FC931654; organism=Citrus clementina; type=EST; length=707bp
ACAGACGGTTGTTCACAGAAATGGGAAGATGAAGCAAAGAACATGGCCGG
ATCGATCGACCGGCTCTCGGTTCACAGCTCTTCAATTCCCGATAACCGAG
AAGGACAACCGCCGGCCAGAACTCACCGCCAGTGCACGGAAGGCTAGAAT
CAAACGGCGCAGCCGCTTCAGCTGCTCACGATCAATAAAATCAACGGAGG
GTCATGATTTCGCGAGCCTACCGTTCGATGTCTTGAACAAAATCGCAGCG
TCATTCACGCTGCCTCAACTGAGAGCGGCGTCGCTGGTGTGCAAGTCATG
GAACGACGCGCTTCGGCCGTTGAGAGAGGCGATGGTGTTACTAAGATGGG
GGAAACGATTCAAGCACGGCCGAGGCGTCCGCAAGAACTTGGATAAGGCT
CTCGACTCGTTCTTGAAAGGCGCGGCTCGCGGCTCCACGCTTGCTATGGT
TGACGCCGGACTGATGTATTGGGCGATGGACAAAAAGGAGGCGGCTATTA
GCTTGTATCGGCAAGCCGCTGTGCTTGGAGATCCAGCTGGTCAGTTCAAT
TTGGGAATTTCTTATTTGCAAGCGCAACCTGCAAATGCAGAGGAAGCTGT
GAAGTTGTTGTATCAAGCATCGATTGCTGGCCATGTTCGAGCTCAGTATC
AACTTGCACTTTGCCTGCATAGAGGTCGAGGAGTGGATTTCAAATCTCAG
AGCTGCT
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