FC931661

Overview
NameFC931661
Unique NameFC931661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931661_ssr20 microsatellite FC931661_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11293 contig Ccv1_Contig11293:28..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931661 vs. ExPASy Swiss-Prot
Match: FLA7_ARATH (Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.365e-53
Identity = 102/131 (77.86%), Postives = 114/131 (87.02%), Query Frame = 1
Query:  304 EHVNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFHALPHYYSFADFKNLSQMSPVRTYAGGDYKLNFTDVSGAVHIDSXWSRTKVSSSVHS 696
            E+VNLT+LLSVAGPFHTFL+YL ST V+ETFQNQANNT+EGITIFVPKDDAFK+ K P L+NLT+DQLKQL LFHALPHYYS ++FKNLSQ  PV T+AGG Y L FTDVSG V IDS W+RTKVSSSV S
Sbjct:   43 ENVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGGQYSLKFTDVSGTVRIDSLWTRTKVSSSVFS 173          
BLAST of FC931661 vs. ExPASy Swiss-Prot
Match: FLA12_ARATH (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  313 NLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFHALPHYYSFADFKNLSQMSPVRTYAG----GDYKLNFTDVSGAVHIDSXWSRTKVSSSVHS 696
            N+T +L  AG F  F+  L+ST V      Q NN+D GITIF P D +F  LK  +L +LT +Q  +L  FH +P Y S ++F+ +S  +P+RT AG    G + LN T     V+I S  + T VS +V+S
Sbjct:   39 NVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTIS--NPLRTQAGDSADGHFPLNVTTSGNTVNITSGVTNTTVSGNVYS 168          
BLAST of FC931661 vs. ExPASy Swiss-Prot
Match: FLA9_ARATH (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 50/131 (38.17%), Postives = 77/131 (58.78%), Query Frame = 1
Query:  310 VNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFHALPHYYSFADFKNLSQMSPVRTYAGGD----YKLNFTDVSGAVHIDSXWSRTKVSSSV 690
            +NLT +L   G F TF++ L  T+V      Q N++ EG+T+F P D+AF++LK  +L  L+ D   +L L+H  P YYS  D   LS  +PVRT A G     Y LNFT  +  +++ + +  T++S+S+
Sbjct:   38 INLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDL--LSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSL 166          
BLAST of FC931661 vs. ExPASy Swiss-Prot
Match: FLA6_ARATH (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana GN=FLA6 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 50/133 (37.59%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  310 VNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFHALPHYYSFADFKNLSQMSPVRTYA----GGDYKLNFTD--VSGAVHIDSXWSRTKVSSSV 690
            +NLT +L     F T +  L +T+V      Q N++D+G+TIF P D+AF  LK  +L +LT  Q  QL L+H +P YYS +D   L   +PVRT A    GG + LNFT    S  V++ +    T++++++
Sbjct:   37 INLTAILEAGHQFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDL--LLASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNAL 167          
BLAST of FC931661 vs. ExPASy Swiss-Prot
Match: FLA13_ARATH (Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana GN=FLA13 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  310 VNLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDEGITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFHALPHYYSFADFKNLSQMSPVRTYA-----GGDYKLNFTDVSGAVHIDSXWSRTKVSSSV 690
            +N+T +L   G F T +  L +T++      Q N++ EG+T+  P D+AF++LK  +L  L+ D   +L L+H  P +Y+  D   LS  +PVRT A     GG Y LNFT     V++ +    T++S+S+
Sbjct:   35 INITAILEKGGQFVTLIRLLNTTQIGNQINIQINSSSEGMTVLAPTDNAFQNLKPGTLNKLSPDDQVKLILYHVSPKFYTLEDL--LSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSL 164          
BLAST of FC931661 vs. ExPASy Swiss-Prot
Match: FLA11_ARATH (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  313 NLTDLLSVAGPFHTFLNYLESTKVLETFQNQANNTDE-GITIFVPKDDAFKSLKKPSLANLTQDQLKQLCLFHALPHYYSFADFKNLSQMSPVRTYAG----GDYKLNFTDVSGAVHIDSXWSRTKVSSSVHS 696
            N+T +L  AG F  F+  L+ST+  +    Q N++   G+T+F P D+AF SLK  +L +L+  Q  QL  FH LP   +   F+ +S  +P+RT AG    G + LN T     V+I +      V++SV+S
Sbjct:   36 NITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVS--NPLRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYS 166          
The following BLAST results are available for this feature:
BLAST of FC931661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FLA7_ARATH1.365e-5377.86Fasciclin-like arabinogalactan protein 7 OS=Arabid... [more]
FLA12_ARATH3.751e-1940.91Fasciclin-like arabinogalactan protein 12 OS=Arabi... [more]
FLA9_ARATH5.417e-1838.17Fasciclin-like arabinogalactan protein 9 OS=Arabid... [more]
FLA6_ARATH2.516e-1537.59Fasciclin-like arabinogalactan protein 6 OS=Arabid... [more]
FLA13_ARATH2.516e-1534.85Fasciclin-like arabinogalactan protein 13 OS=Arabi... [more]
FLA11_ARATH2.782e-1436.09Fasciclin-like arabinogalactan protein 11 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC34107F04EF PostHarvP1 Citrus clementina cDNA clone C34107F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931661 ID=FC931661; Name=FC931661; organism=Citrus clementina; type=EST; length=697bp
CTAACATCACCATTTCTCACTCTCTCTCTCTCCCTGCCTCTGTCTCTGAA
TTCCACTTAGTCAGACGTTTGGTGAGCTGGGTTTTTCAGAAACTTGTTTG
TGGGTTACGGTGTGTGGATTTTGTAAAACAGAATTTGGAGAGTTTGGTCA
ACTTAGAAAGCAACATAAAACTTCATGGAAAAAATGGAAGTTTCCATGGC
TTTGATGATTAGTGCACTATTGCTTTTGTTCTCTTCAGCTAATGCTCAGA
AAGCTGCTAGCCCTCCCACATTCAGTCCAACTCCGGCCCCAGCACCGGCG
CCTGAACATGTGAACCTCACTGATTTACTCTCTGTAGCTGGCCCATTCCA
CACGTTCCTCAATTACCTTGAGTCCACTAAAGTGCTTGAGACCTTCCAAA
ACCAAGCCAACAATACTGACGAAGGCATTACCATCTTTGTGCCAAAAGAT
GATGCCTTCAAGTCTCTCAAGAAACCTTCTTTAGCCAATCTCACACAGGA
TCAGCTTAAGCAGCTTTGTCTATTCCATGCCTTGCCACATTACTACTCAT
TTGCTGATTTCAAGAACCTTAGCCAAATGAGCCCTGTTCGCACATATGCT
GGTGGAGATTACAAATTGAACTTCACTGATGTTTCGGGGGCTGTCCATAT
CGATTCANGATGGTCTAGAACTAAAGTTAGCAGCAGCGTGCATTCAC
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