FC931662

Overview
NameFC931662
Unique NameFC931662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15529 contig Ccv1_Contig15529:6..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 4.138e-93
Identity = 162/227 (71.37%), Postives = 191/227 (84.14%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MGRVIRNQRKG GSIFT++TRL +  A+ RTLD+AE HGY RGVVK+I+HDAGRGAPLAKV FR PYK+K+  ETFIANEG++TGQFIYAGKNA+L VGNILPL S+PEGT+++NVEE+ GDRGAL RTSGNYV VIGHNP++ KTR++LPSGAKK++ + ARG++G++AGGGR DKPLLKAGRA HK+ VKRNSWPKTRGVAMNPVD              STISR
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREETFIANEGVHTGQFIYAGKNASLNVGNILPLGSVPEGTIVSNVEERPGDRGALARTSGNYVIVIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISR 227          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.019e-91
Identity = 160/227 (70.48%), Postives = 189/227 (83.26%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MGRVIRNQRKG GSIFT++TRL +  A+ RTLD+AE HGY RGVVK+I+HDAGRGAPLAKV FR PYK+K+  E FIANEG++TGQFIYAGK A+L VGN+LPL S+PEGT+++NVEEK GDRGAL R SGNYV +IGHNP++ KTRV+LPSGAKK+I + ARG++G++AGGGRTDKPLLKAGRA HK+ +KRNSWPKTRGVAMNPVD              STISR
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISR 227          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 332.028 bits (850), Expect = 1.922e-90
Identity = 157/227 (69.16%), Postives = 188/227 (82.82%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MGRVIRNQRKG GSIFT++TRL +  A+ RTLD+AE HGY RG+VK+I+HD+GRGAPLAKV FR PYK+++  E FIANEG++TGQFIYAGK A+L VGN+LPL S+PEGT+++NVEEK GDRGAL R SGNYV +IGHNP++ KTRV+LPSGAKKVI + ARG++G++AGGGR DKPLLKAGRA HK+ +KRNSWPKTRGVAMNPVD              STISR
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISR 227          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 322.783 bits (826), Expect = 1.166e-87
Identity = 156/208 (75.00%), Postives = 179/208 (86.06%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVD 662
            MGRVIR QRK  G IF A+TRL K  AQ RTLDFAE HGY RGVV++IIHD GRGAPLAKV FR+PY ++   ETF+A EGMYTGQF+Y GKNAALTVGN+LP+  MPEGT+I+NVEEKAGDRGALGR+SGNYV ++GH+ + GKTRVKLPSGAKKV+ ++ARG+VGIVAGGGR DKPLLKAGRA HK+ VKRN WP+TRGVAMNPVD
Sbjct:    1 MGRVIRAQRKS-GGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVD 207          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL8_SPOFR (60S ribosomal protein L8 OS=Spodoptera frugiperda GN=RpL8 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.076e-80
Identity = 143/227 (63.00%), Postives = 171/227 (75.33%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MGRVIR QRKG GS+F ++T+  K   + R+LD+AE HGY +GVVK+IIHD GRGAPLA V FR PYKFK   E FIA EG+YTGQF+Y GK A L VGN++P+ +MPEGT++ N+EEK GDRG L R SGN+ TVIGHNP+  +TRVKLPSGAKKV+ ++ RGMVGIVAGGGR DKP+LKAGRA HK+ VKRN WP  RGVAMNPV+              ST+ R
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKR 227          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL8_MAMBR (60S ribosomal protein L8 OS=Mamestra brassicae GN=RpL8 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.076e-80
Identity = 143/227 (63.00%), Postives = 171/227 (75.33%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MGRVIR QRKG GS+F ++T+  K   + R+LD+AE HGY +GVVK+IIHD GRGAPLA V FR PYKFK   E FIA EG+YTGQF+Y GK A L VGN++P+ +MPEGT++ N+EEK GDRG L R SGN+ TVIGHNP+  +TRVKLPSGAKKV+ ++ RGMVGIVAGGGR DKP+LKAGRA HK+ VKRN WP  RGVAMNPV+              ST+ R
Sbjct:    1 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKR 227          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL8_DROME (60S ribosomal protein L8 OS=Drosophila melanogaster GN=RpL8 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.018e-80
Identity = 145/227 (63.88%), Postives = 170/227 (74.89%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MGRVIR QRKG GS+F A+ +  K  A+ R+LDFAE  GY RGVVK+IIHD GRGAPLA V FR PY++K+  E FIA EGM+TGQF+Y G+ A L +GN++PL+ MPEGT+I N+EEK GDRG L RTSGNY TVI HN +  KTRVKLPSGAKKV+ +  R MVGIVAGGGR DKP+LKAGRA HK+ VKRNSWPK RGVAMNPV+              ST+ R
Sbjct:    1 MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKR 227          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 2.604e-79
Identity = 140/227 (61.67%), Postives = 169/227 (74.45%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MGRVIR QRKG GS+F A+T+  K   + R LD+AE HGY +GVVK+IIHD GRGAPLA V FR PY+F++  + FIA EGMYTGQF+Y G+ A L +GN+LP+  MPEGT++ N+EEK GDRG L RTSGNY +VI HNP+  +TRVKLPSGAKKV+ +  R M+GIVAGGGR DKP+LKAGRA HK+ VKRN WPK RGVAMNPV+              ST+ R
Sbjct:    1 MGRVIRAQRKGAGSVFRAHTKKRKGEPKLRHLDYAERHGYLKGVVKQIIHDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGRRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMIGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKR 227          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.604e-79
Identity = 142/227 (62.56%), Postives = 167/227 (73.57%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MGRVIR QRKG GS+FTA+T+  K   + R LD+AE HGY +G VK+IIHD GRGAPLA V FR PYKF +  + FIA EGMYTGQF+Y GK A L +GN+LP+  MPEGT++ N+EEK GDRG L RTSGNY +VI HNP+  +TRVKLPSGAKKV+ +  R MVGIVAGGGR DKP+LKAGRA  K+ VKRN WPK RGVAMNPV+              ST+ R
Sbjct:    1 MGRVIRAQRKGEGSVFTAHTKKRKGEPKLRALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHFRDPYKFNVRKQLFIAAEGMYTGQFVYCGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKR 227          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 294.664 bits (753), Expect = 3.401e-79
Identity = 141/227 (62.11%), Postives = 168/227 (74.01%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MGRVIR QRKG GS+F A+ +  K  A+ R +DFAE HGY +G+VK+IIHD GRGAPLAKV FR PY+FK  TE F+A EG++TGQF+Y GK A L +GN+LP+ +MPEGT++  VEEK GDRG L R SGNY TVI HNPE  KTRVKLPSG+KKVI +  R +VG+VAGGGR DKP+LKAGRA HK+  KRN WP+ RGVAMNPV+              STI R
Sbjct:    1 MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRR 227          
The following BLAST results are available for this feature:
BLAST of FC931662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ASHGO4.138e-9371.3760S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_CANGA1.019e-9170.4860S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST1.922e-9069.1660S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_SCHPO1.166e-8775.0060S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL8_SPOFR3.076e-8063.0060S ribosomal protein L8 OS=Spodoptera frugiperda ... [more]
RL8_MAMBR3.076e-8063.0060S ribosomal protein L8 OS=Mamestra brassicae GN=... [more]
RL8_DROME4.018e-8063.8860S ribosomal protein L8 OS=Drosophila melanogaste... [more]
RL8_ANOGA2.604e-7961.6760S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL2.604e-7962.5660S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL8_XENTR3.401e-7962.1160S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107F05EF PostHarvP1 Citrus clementina cDNA clone C34107F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931662 ID=FC931662; Name=FC931662; organism=Citrus clementina; type=EST; length=723bp
GGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTCGTGTC
ATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAACACCCG
CCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGAGGCTC
ACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCGGCCGT
GGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTCAAGAT
GATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCAGTTCA
TCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTCCTCTC
GCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAGGCTGG
TGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGTTATTG
GCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCGGTGCC
AAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTTGCCGG
TGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAAGCACA
AGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTGCCATG
AACCCCGTCGATCACCCTCACGGTGGTGGTAACCACCAGCACATCGGGTA
GGGCTCGACCATCTCCCGCTACG
back to top