FC931666

Overview
NameFC931666
Unique NameFC931666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931666_ssr149 microsatellite FC931666_ssr149:149..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7227 contig Ccv1_Contig7227:128..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 8.591e-128
Identity = 143/153 (93.46%), Postives = 143/153 (93.46%), Query Frame = 1
Query:   19 MATLLSPFSPSPLAKVSQIIDSTXXXXXXXXXXGRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 477
            MATLLSPFSPSPLAKVSQIIDST          GRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF
Sbjct:    1 MATLLSPFSPSPLAKVSQIIDSTSSPSFSLFPLGRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 153          

HSP 2 Score: 174.866 bits (442), Expect = 8.591e-128
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 2
Query:  470 VFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 721
            VF NDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP
Sbjct:  152 VFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 235          
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 9.502e-68
Identity = 81/154 (52.60%), Postives = 97/154 (62.99%), Query Frame = 1
Query:   19 MATLLSPFSPSPLAKVSQIIDSTXXXXXXXXXXGRQNACSRKADHHHHHRIRTSK-FGNFLELTPESVPEFLDFDLPWFHPS-DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCV 474
            M TLL PF PSPL  +      T             N   +K     H+R ++S  F +FL+L P S PE LD ++ W     D   +DVIIIGTGPAGLRLAEQVS ++ +KVCCVDPSPLS WPNNYGVWVDEFE +GL DCLD  WP++CV
Sbjct:    1 METLLKPF-PSPLLSIP-----TPNMYSFKHNSTFPNPTKQKDSRKFHYRNKSSTHFCSFLDLAPTSKPESLDVNISWVDTDLDGAEFDVIIIGTGPAGLRLAEQVS-KYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLGLEDCLDHKWPVSCV 147          

HSP 2 Score: 129.798 bits (325), Expect = 9.502e-68
Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 2
Query:  470 VFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 721
            V  +DHKTKYLDRPYGRVSR  LK KLL +CV N VKF+KAKV  V H+EFESSIVCDDG +I  SLIVDASG+AS F+EYDKP
Sbjct:  147 VHISDHKTKYLDRPYGRVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEFESSIVCDDGRKISGSLIVDASGYASDFIEYDKP 230          
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.673e-67
Identity = 71/118 (60.17%), Postives = 85/118 (72.03%), Query Frame = 1
Query:  127 NACSRKADHHHHHRIRTSK-FGNFLELTPESVPEFLDFDLPWFHP-SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCV 474
            N  ++K     H R  +SK F +FL+L P S PE  D ++    P S R ++DVIIIG GPAGLRLAE VS ++ +KVCCVDPSPLS WPNNYGVWVDEFE++GL DCLD  WPMTCV
Sbjct:   31 NPTTKKKSRKCHFRNESSKLFCSFLDLAPISKPESFDVNISLVDPNSGRAQFDVIIIGAGPAGLRLAEHVS-KYGIKVCCVDPSPLSMWPNNYGVWVDEFENLGLEDCLDHKWPMTCV 147          

HSP 2 Score: 134.42 bits (337), Expect = 4.673e-67
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 2
Query:  470 VFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 721
            V  NDHKTKYL RPYGRVSR  LK +LL +CV N VKF+KAKVW V H+EFESSIVCDDG +I+ SL+VDASGFAS F+EYDKP
Sbjct:  147 VHINDHKTKYLGRPYGRVSRKKLKLRLLNSCVENRVKFYKAKVWKVEHEEFESSIVCDDGKKIRGSLVVDASGFASDFIEYDKP 230          
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.366e-47
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  196 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 477
            LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + VC +DP+P   WPNNYGVWVDEFE + L+DCLD TW    V+
Sbjct:   56 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVY 148          

HSP 2 Score: 101.293 bits (251), Expect = 1.366e-47
Identity = 44/84 (52.38%), Postives = 67/84 (79.76%), Query Frame = 2
Query:  470 VFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 721
            V+ +D  TK L+RPYGRV+R  LK+K+++ C+ NGVKFH+AKV  V H+E +S ++C+DG  I+A++++DA+GF+ S V+YDKP
Sbjct:  147 VYIDDKTTKDLNRPYGRVNRKQLKSKMMQKCILNGVKFHQAKVIKVIHEESKSMLICNDGITIQATVVLDATGFSRSLVQYDKP 230          
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.780e-47
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  178 SKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 477
            +K    LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + V  +DPSP   WPNNYGVWVDEFE + L+DCLD TW  T V+
Sbjct:   52 AKSSALLELVPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEA-GLSVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGTVVY 150          

HSP 2 Score: 101.679 bits (252), Expect = 1.780e-47
Identity = 44/85 (51.76%), Postives = 67/85 (78.82%), Query Frame = 2
Query:  467 LVFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 721
            +V+ +D+ TK LDRPYGRV+R  LK+K+++ C+ NGVKFH AKV  V H+E +S ++C+DG  I+A++++DA+GF+   V+YDKP
Sbjct:  148 VVYIDDNTTKDLDRPYGRVNRKQLKSKMMQKCILNGVKFHHAKVIKVIHEEAKSMLICNDGVTIQATVVLDATGFSRCLVQYDKP 232          
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.940e-47
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  196 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 477
            LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + VC +DP+P   WPNNYGVWVDEFE + L+DCLD TW    V+
Sbjct:   58 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVY 150          

HSP 2 Score: 99.7525 bits (247), Expect = 3.940e-47
Identity = 43/84 (51.19%), Postives = 66/84 (78.57%), Query Frame = 2
Query:  470 VFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 721
            V+ +D+  K L RPYGRV+R  LK+K+++ C+ NGVKFH+AKV  V H+E +S ++C+DG  I+A++++DA+GF+ S V+YDKP
Sbjct:  149 VYIDDNTAKDLHRPYGRVNRKQLKSKMMQKCIMNGVKFHQAKVIKVIHEESKSMLICNDGITIQATVVLDATGFSRSLVQYDKP 232          
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.122e-40
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  196 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 477
            L+L PE   E L+FDLP + PS  +  D+ ++G GP     +  +     + V  +DP+P   WPNNYGVWVDEFED+ L+DCLD TW    V+
Sbjct:   62 LDLVPEIKKEHLEFDLPLYDPSKALTLDLAVVGGGPLARSCSTSLGG--GLSVVSIDPNPKLIWPNNYGVWVDEFEDMDLLDCLDATWSGAIVY 153          

HSP 2 Score: 93.2041 bits (230), Expect = 3.122e-40
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  467 LVFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 721
            +V+ +D  TK L RPY RV+R  LK+K+++ CVSNGV+FH+A V    H+E +S ++C DG  I A +++DA+GF+   V+YDKP
Sbjct:  151 IVYVDDRSTKNLSRPYARVNRKNLKSKMMKKCVSNGVRFHQATVVKAMHEEEKSYLICSDGVTIDARVVLDATGFSRCLVQYDKP 235          
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  196 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 477
            L+L PE+  E LDF+LP +  S     D+ I+G GPAGL +A+QVS    + VC +DPSP   WPNNYGVWVDEFE + L+DCLD TW    V+
Sbjct:   57 LDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEA-GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVY 149          

HSP 2 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 51/112 (45.54%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  386 GLTTMEFGLMSLKT*DL*TVWTKLGR*LVFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKP 721
            G+   EF  M L    L T W+     +V+ ++   K L RPYGRV+R  LK+K+L+ C++NGVKFH++KV +V H+E  S++VC DG +I+AS+++DA+GF+   V+YDKP
Sbjct:  124 GVWVDEFEAMDLLD-CLDTTWSGA---VVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQASVVLDATGFSRCLVQYDKP 231          
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 4.906e-19
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  277 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 477
            D+++IG GPAGL LA + S++  +KV  + P    T  NNYGVW DEF D+GL  C++  W  T V+
Sbjct:  110 DLVVIGCGPAGLALAAE-SAKLGLKVGLIGPDLPFT--NNYGVWEDEFNDLGLQKCIEHVWRETIVY 173          

HSP 2 Score: 53.5286 bits (127), Expect = 4.906e-19
Identity = 31/78 (39.74%), Postives = 42/78 (53.85%), Query Frame = 2
Query:  467 LVFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIV-CDDGNEIKASLIVDASGFAS 697
            +V+ +D K   + R YGRVSR +L  +LL  CV +GV +  +KV  +        +V CDD N I   L   ASG AS
Sbjct:  171 IVYLDDDKPITIGRAYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLATVASGAAS 248          
BLAST of FC931666 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.667e-16
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  277 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVF 477
            D+++IG GPAGL LA + S++  + V  V P    T  NNYGVW DEF+D+GL  C++  W  T V+
Sbjct:  107 DLVVIGCGPAGLALAAE-SAKLGLNVGLVGPDLPFT--NNYGVWEDEFKDLGLQACIEHVWRDTIVY 170          

HSP 2 Score: 46.2098 bits (108), Expect = 2.667e-16
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 2
Query:  467 LVFFNDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWH-VNHQEFESSIVCDDGNEIKASLIVDASGFAS-SFVEYD 715
            +V+ +D +   + R YGRVSR+ L  +LL+ CV  GV +  +KV   V     +S + C+    I    +  ASG AS  F++Y+
Sbjct:  168 IVYLDDDEPILIGRAYGRVSRHFLHEELLKRCVEAGVLYLNSKVDRIVEATNGQSLVECEGDVVIPCRFVTVASGAASGKFLQYE 252          
The following BLAST results are available for this feature:
BLAST of FC931666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CCS_CITSI8.591e-12893.46Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
CCS_CAPAN9.502e-6852.60Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
NXS_SOLTU4.673e-6760.17Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
LCYB_CAPAN1.366e-4753.19Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_TOBAC1.780e-4752.00Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_SOLLC3.940e-4753.19Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_NARPS3.122e-4044.68Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_ARATH6.623e-2253.19Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYE_ARATH4.906e-1946.27Lycopene epsilon cyclase, chloroplastic OS=Arabido... [more]
LCYE_SOLLC2.667e-1646.27Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
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Properties
Property NameValue
Genbank descriptionC34107F09EF PostHarvP1 Citrus clementina cDNA clone C34107F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931666 ID=FC931666; Name=FC931666; organism=Citrus clementina; type=EST; length=727bp
ATTTCTCTGCGCTCTGGCATGGCAACTCTTCTTAGCCCGTTTTCTCCTTC
TCCTTTAGCTAAAGTTTCGCAAATAATTGATTCAACATCATCACCTTCAT
TTTCCCTATTTCCATTAGGCCGCCAAAATGCATGTTCAAGAAAGGCGGAT
CATCATCATCATCACAGGATCCGGACAAGCAAGTTTGGTAACTTCCTAGA
GTTGACACCGGAGTCGGTACCTGAATTCTTAGACTTTGATCTCCCCTGGT
TTCATCCGTCCGATCGTATTCGATATGACGTGATCATCATTGGCACTGGA
CCAGCCGGCCTCCGTCTAGCTGAGCAAGTCTCATCGCGTCATAGTGTCAA
GGTATGTTGTGTTGATCCTTCACCTCTTTCTACGTGGCCTAACAACTATG
GAGTTTGGGTTGATGAGTTTGAAGACATAGGACTTGTAGACTGTTTGGAC
AAAACTTGGCCGATGACTTGTGTTTTTTAATGATCACAAGACCAAGTATC
TAGACAGGCCCTACGGTCGTGTTAGTAGAAATATTTTGAAGACAAAGTTA
TTAGAGAATTGTGTTTCAAATGGAGTTAAGTTTCATAAGGCTAAAGTTTG
GCACGTGAATCATCAGGAGTTCGAGTCTTCGATTGTTTGTGATGATGGGA
ATGAGATTAAGGCTAGCTTGATTGTTGATGCTAGTGGCTTTGCTAGTAGT
TTTGTTGAGTATGATAAGCCAGAAACC
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