FC931670

Overview
NameFC931670
Unique NameFC931670
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931670_ssr9 microsatellite FC931670_ssr9:9..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.061e-82
Identity = 153/213 (71.83%), Postives = 172/213 (80.75%), Query Frame = 1
Query:   64 MGGKSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLAAF 702
            MGGKSA K  YF+KL+ LL +Y +IFIV VDNVSSQQMHEIR +LRGEAVVLMGKNTMVRRALK FV + PE+ERLLP V+GNVGF+FT GDLK  ++KIL                DVW+PAGNTGMEPGKT+FFQALGVPTKIARGTIEI +DLKLVEAG KVG SEATLLN+LNISPFTYGM I QVY+ G  F +DVLDI++EQLL AF
Sbjct:    1 MGGKSANKAGYFDKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRALKTFVADTPEYERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSDVLDISEEQLLKAF 213          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.609e-80
Identity = 150/213 (70.42%), Postives = 170/213 (79.81%), Query Frame = 1
Query:   64 MGGKSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLAAF 702
            MGGKSA K  YF+KL+ LL EY +IFIV VDNVSSQQMHEIR ALR + VVLMGKNTMVRRALK F+ ++PE+ERLLP V+GNVGF+FT GDLK  ++KIL                DVW+PAGNTGMEPGKT+FFQALGVPTKIARGTIEI +DLKLVEAG KVG SEATLLN+LNISPFTYGM I QVY+ G  F + VLDI++EQLL AF
Sbjct:    1 MGGKSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFLVDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSSVLDISEEQLLKAF 213          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.973e-72
Identity = 134/213 (62.91%), Postives = 165/213 (77.46%), Query Frame = 1
Query:   64 MGGKSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLAAF 702
            MGG    K  YF KLR  L EY ++F+VGVDNVSSQQMHE+R  LRG AVVLMGKNTMVRRA++GF+++ P++E+LLP V+G VGF+FT   L   K  I+               +D+WV A NTGMEPGKT+FFQALGVPTKIARGTIEIVSD+K+V+AGNKVG SEA+LLNLLNISPFT+G+T+ QVY+NGQ F + +LDITDE+L++ F
Sbjct:    1 MGGIREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHF 213          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.064e-65
Identity = 119/204 (58.33%), Postives = 152/204 (74.51%), Query Frame = 1
Query:   82 TKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLL 693
            +K  YFEKLR+L  +Y+++F+V +DNVSSQQMH +R  LRG A ++MGKNTM+RRA++G + + PE ERLLP VRGNVGF+FT  DLK  +E I+                DV+VPAGNTGMEPGKT+FFQALG+PTKI RGTIEI SD+ LV    KVG SEATLLN+LNISPFTYGM +  +Y+ G  FS ++LD+++E L+
Sbjct:    7 SKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLI 210          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.361e-61
Identity = 116/210 (55.24%), Postives = 155/210 (73.81%), Query Frame = 1
Query:   73 KSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLAAF 702
            ++  K+ YF K+  LLN+Y   FIVG DNV S+QM  IR++LRG+A+VLMGKNTM+R+A++G +  NP  E+LLPH+RGNVGF+FTK DL   ++ +L                +V VPA NTG+ P KT+FFQALG+ TKI+RGTIEI+SD++L+  G+KVGASEATLLN+LNISPF+YG+ I QVY+NG  +S +VLDIT++ L   F
Sbjct:    6 RATWKSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRF 215          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.361e-61
Identity = 115/210 (54.76%), Postives = 157/210 (74.76%), Query Frame = 1
Query:   73 KSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLAAF 702
            ++  K+ YF K+  LL++Y   F+VG DNV S+QM +IRM+LRG+AVVLMGKNTM+R+A++G +  NP  E+LLPH+RGNVGF+FTK DL   ++ +L                DV VPA NTG+ P KT+FFQALG+ TKI+RGTIEI+SD++L++ G+KVGASEATLLN+LNISPF++G+ I QV++NG  ++ +VLDIT+E L   F
Sbjct:    6 RATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRF 215          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.084e-61
Identity = 116/210 (55.24%), Postives = 157/210 (74.76%), Query Frame = 1
Query:   73 KSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLAAF 702
            ++  K+ YF K+  LL++Y   FIVG DNV S+QM +IRM+LRG+AVVLMGKNTM+R+A++G +  N   E+LLPH++GNVGF+FTK DL   ++ +L                DV VPA NTG+ P KT+FFQALG+ TKI+RGTIEI+SD++L++ G+KVGASEATLLN+LNISPF++G+ I QVY+NG  +S +VLDIT++ L A F
Sbjct:    6 RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARF 215          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.028e-61
Identity = 115/210 (54.76%), Postives = 158/210 (75.24%), Query Frame = 1
Query:   73 KSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLAAF 702
            ++  K+ YF K+  LL++Y   FIVG DNV S+QM +IRM+LRG+AVVLMGKNTM+R+A++G +  NP  E+LLPH+RGNVGF+FTK DL   ++ +L                +V VPA NTG+ P KT+FFQALG+ TKI+RGTIEI+SD++L++ G+KVGASEATLLN+LNISPF++G+ I QV++NG  ++ +VLDIT+E L + F
Sbjct:    6 RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRF 215          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 4.028e-61
Identity = 115/210 (54.76%), Postives = 158/210 (75.24%), Query Frame = 1
Query:   73 KSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLAAF 702
            ++  K+ YF K+  LL++Y   FIVG DNV S+QM +IRM+LRG+AVVLMGKNTM+R+A++G +  NP  E+LLPH+RGNVGF+FTK DL   ++ +L                +V VPA NTG+ P KT+FFQALG+ TKI+RGTIEI+SD++L++ G+KVGASEATLLN+LNISPF++G+ I QV++NG  ++ +VLDIT+E L + F
Sbjct:    6 RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRF 215          
BLAST of FC931670 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.261e-61
Identity = 115/210 (54.76%), Postives = 158/210 (75.24%), Query Frame = 1
Query:   73 KSATKTAYFEKLRTLLNEYSTIFIVGVDNVSSQQMHEIRMALRGEAVVLMGKNTMVRRALKGFVTENPEWERLLPHVRGNVGFIFTKGDLKATKEKILXXXXXXXXXXXXXXXDDVWVPAGNTGMEPGKTAFFQALGVPTKIARGTIEIVSDLKLVEAGNKVGASEATLLNLLNISPFTYGMTITQVYENGQCFSADVLDITDEQLLAAF 702
            ++  K+ YF K+  LL++Y   FIVG DNV S+QM +IRM+LRG+AVVLMGKNTM+R+A++G +  NP  E+LLPH+RGNVGF+FTK DL   ++ +L                +V VPA NTG+ P KT+FFQALG+ TKI+RGTIEI+SD++L++ G+KVGASEATLLN+LNISPF++G+ I QV++NG  ++ +VLDIT+E L + F
Sbjct:    6 RATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRF 215          
The following BLAST results are available for this feature:
BLAST of FC931670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLA0_NEUCR7.061e-8271.8360S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_PODAN6.609e-8070.4260S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_YEAST2.973e-7262.9160S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_SCHPO2.064e-6558.3360S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_ICTPU2.361e-6155.2460S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_CHICK2.361e-6154.7660S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_RANSY3.084e-6155.2460S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_HUMAN4.028e-6154.7660S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN4.028e-6154.7660S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_PIG5.261e-6154.7660S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC34107G01EF PostHarvP1 Citrus clementina cDNA clone C34107G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931670 ID=FC931670; Name=FC931670; organism=Citrus clementina; type=EST; length=703bp
GATTCACCACAACAACAACAGACTTTCCCTTAAACAACCTATCTTCACCG
AAATCAAGAAGAAATGGGGGGTAAGTCCGCAACCAAGACCGCTTACTTTG
AGAAGCTGCGTACTCTTCTCAATGAGTACAGCACCATCTTCATCGTTGGA
GTTGACAATGTCAGCTCTCAGCAGATGCACGAGATCCGTATGGCTCTCCG
TGGTGAGGCCGTCGTTCTGATGGGTAAGAACACCATGGTTCGCCGTGCCC
TCAAGGGTTTCGTCACCGAGAACCCCGAGTGGGAGCGCCTCCTTCCCCAC
GTCCGTGGCAACGTTGGTTTCATTTTCACCAAGGGTGACCTTAAGGCCAC
CAAGGAGAAGATCCTTGCCAACCGTGTCGCTGCTCCCGCTCGTGCCGGTG
CCGTCGCCCCCGACGATGTCTGGGTTCCCGCTGGTAACACTGGTATGGAG
CCCGGTAAGACCGCCTTCTTCCAGGCTCTCGGTGTCCCCACCAAGATCGC
TCGTGGTACCATTGAGATTGTTTCCGACCTCAAGCTCGTTGAGGCTGGCA
ACAAGGTCGGTGCCTCCGAGGCTACCCTTCTTAACCTGTTGAACATCTCT
CCGTTCACCTACGGTATGACCATCACCCAGGTCTACGAGAACGGTCAGTG
CTTCAGTGCCGATGTTCTTGACATCACCGATGAGCAGCTCTTGGCCGCCT
TCT
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