FC931677

Overview
NameFC931677
Unique NameFC931677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931677_ssr460 microsatellite FC931677_ssr460:460..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 1.894e-100
Identity = 172/222 (77.48%), Postives = 199/222 (89.64%), Query Frame = 2
Query:    2 RELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 664
            RELA+LGDKM+KFSGMIEGFIWSP+ G+ N+  D W  E+GPHSDF GPTSG TACVA+I+DK+L VANAGDSRCV+SRK QA NLSKDHKPDLEVEK+RILKAGGFI  GR+NGSLNL RAIGD+EFK NK LP+EKQ+VTA+PDI+TI+LCDDD+FLV+ACDGIWDC+SSQELVDF+ +QL +ETKLS +CEKV DRCLAP +A GEGCDNMT+ILVQFK
Sbjct:  109 RELAVLGDKMNKFSGMIEGFIWSPRSGDTNNQPDSWPLEDGPHSDFTGPTSGCTACVALIKDKKLFVANAGDSRCVISRKSQAYNLSKDHKPDLEVEKERILKAGGFIHAGRINGSLNLTRAIGDMEFKQNKFLPSEKQMVTADPDINTIDLCDDDDFLVVACDGIWDCMSSQELVDFIHEQLKSETKLSTVCEKVVDRCLAPDTATGEGCDNMTIILVQFK 330          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 3.231e-100
Identity = 170/222 (76.58%), Postives = 201/222 (90.54%), Query Frame = 2
Query:    2 RELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAP-SAGGEGCDNMTMILVQFK 664
            RELA+LGDK++KFSGMIEG IWSP+ G++ +  D WA EEGPHSDF GP SGSTACVA++RDKQL VANAGDSRCV+SRK QA NLS+DHKPDLE EK+RILKAGGFI  GRVNGSLNL+RAIGD+EFK NK LP+EKQIVTA+PD++T+ELCDDD+FLV+ACDGIWDC++SQ+LVDF+ +QL +ETKLSV+CEKV DRCLAP ++GGEGCDNMTMILV+FK
Sbjct:  109 RELAVLGDKINKFSGMIEGLIWSPRSGDSANKPDAWAFEEGPHSDFAGPNSGSTACVAVVRDKQLFVANAGDSRCVISRKNQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLSRAIGDMEFKQNKFLPSEKQIVTASPDVNTVELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTMILVRFK 330          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.660e-96
Identity = 161/222 (72.52%), Postives = 195/222 (87.84%), Query Frame = 2
Query:    2 RELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA-GGEGCDNMTMILVQFK 664
            REL  LGDK+++ SGMIEG IWSP+G ++ND  DDWA EEGPHSDF GPT GSTACVAI+R+ QLVVANAGDSRCV+SR GQA NLS+DHKP+LE E++RILKAGG+IQ+GRVNG++NL+RAIGD+EFK NK L  +KQ++TANPDI+T+ELCDDD+FLV+ACDGIWDC+SSQ+LVDF+ + +  E+ LS +CE+V DRCLAPS  GGEGCDNMTMILVQFK
Sbjct:  109 RELQALGDKINQISGMIEGLIWSPRGSDSNDQHDDWAFEEGPHSDFAGPTCGSTACVAIVRNSQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGGYIQMGRVNGTINLSRAIGDIEFKQNKFLSPDKQMLTANPDINTVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHINTESSLSAVCERVLDRCLAPSTLGGEGCDNMTMILVQFK 330          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.076e-95
Identity = 161/222 (72.52%), Postives = 192/222 (86.49%), Query Frame = 2
Query:    2 RELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSA-GGEGCDNMTMILVQFK 664
            REL+ LGDK++K  GMIEG IWSP+G ++N+  DDW+ EEGPHSDF GPT G TACVA+IR+ QLVVANAGDSRCV+SR GQA NLS+DHKP+LE E+DRI+KAGGFI +GR+NGSLNL RAIGD+EFK NK LP EKQIVTANPDI+ +ELCDDD+FLV+ACDGIWDC+SSQ+LVDF+ + +  E+ LS +CE+V DRCLAPS  GGEGCDNMTM+LVQFK
Sbjct:  109 RELSALGDKINKIGGMIEGLIWSPRGSDSNNGQDDWSFEEGPHSDFAGPTCGCTACVALIRNNQLVVANAGDSRCVISRAGQAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDMEFKQNKFLPPEKQIVTANPDINVVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHIQKESSLSAVCERVLDRCLAPSTIGGEGCDNMTMVLVQFK 330          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: P2C70_ORYSJ (Probable protein phosphatase 2C 70 OS=Oryza sativa subsp. japonica GN=Os09g0558000 PE=2 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 9.752e-89
Identity = 154/221 (69.68%), Postives = 188/221 (85.07%), Query Frame = 2
Query:    2 RELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWASEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGEGCDNMTMILVQFK 664
            RELA LGDK  KF+GM+EG IWSPK GE++   D W +EEGPHS F GPTSGSTACVAIIR+ +L+VANAGDSRCVLSRKG+A +LSKDHKPDL+ EK+RIL AGGFI  GRVNGSLNLARAIGD+E K N+ LPAE+QIVTA P+++T++L +DDEF+V+ACDGIWDC+SSQE+VDFV  ++  E  LS +CEK+ D CLAP +GG+GCDNMT+I+V+FK
Sbjct:  109 RELAELGDKGQKFTGMLEGIIWSPKPGESDKPEDTW-TEEGPHSHFPGPTSGSTACVAIIRNDELIVANAGDSRCVLSRKGRAYDLSKDHKPDLDAEKERILNAGGFIVAGRVNGSLNLARAIGDMELKQNEFLPAERQIVTAEPELNTVKLSEDDEFIVLACDGIWDCMSSQEVVDFVHKEMNTEDSLSAVCEKLLDHCLAPVSGGDGCDNMTVIIVKFK 328          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: Y0417_DROME (Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.534e-52
Identity = 104/196 (53.06%), Postives = 143/196 (72.96%), Query Frame = 2
Query:   86 ANDHFDDWASEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETKLSVICEKVFDRCLAPSAGGE--GCDNMTMILVQFK 664
            AND+F     EE       G  SG TA V +++ + L VANAGDSRCV+SR GQA+ +S DHKP+ + E  RI+KAGG + + GRVNG LNL+RA+GD  +K N +LPAE+Q+++A PDI  + +  +DEF+V+ACDGIW+ +SS+E+V+FVR +L +  KLS ICE++FD CLAP+  G+  GCDNMT ++VQFK
Sbjct:  376 ANDNFCANMIEEP------GKDSGCTAVVCLLQGRDLYVANAGDSRCVISRSGQAIEMSIDHKPEDDEEASRIIKAGGRVTLDGRVNGGLNLSRALGDHAYKTNVTLPAEEQMISALPDIKKLIITPEDEFMVLACDGIWNYMSSEEVVEFVRCRLKDNKKLSTICEELFDNCLAPNTMGDGTGCDNMTAVIVQFK 565          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.231e-50
Identity = 103/183 (56.28%), Postives = 136/183 (74.32%), Query Frame = 2
Query:  143 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFK 664
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP E+Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE+VDF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK
Sbjct:  325 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 507          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.231e-50
Identity = 103/183 (56.28%), Postives = 136/183 (74.32%), Query Frame = 2
Query:  143 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFK 664
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP E+Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE+VDF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK
Sbjct:  324 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 506          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 6.832e-50
Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = 2
Query:  143 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFK 664
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP E+Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE++DF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK
Sbjct:  322 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVIDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 504          
BLAST of FC931677 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.165e-49
Identity = 102/183 (55.74%), Postives = 136/183 (74.32%), Query Frame = 2
Query:  143 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV-GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLSSQELVDFVRDQLTNETK------LSVICEKVFDRCLAP--SAGGEGCDNMTMILVQFK 664
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG + + GRVNG LNL+RAIGD  +K NK+LP ++Q+++A PDI  + L DD EF+VIACDGIW+ +SSQE+VDF++ +++   +      LS I E++ D+CLAP  S  G GCDNMT I++ FK
Sbjct:  321 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKNLPPQEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENGELRLLSSIVEELLDQCLAPDTSGDGTGCDNMTCIIICFK 503          
The following BLAST results are available for this feature:
BLAST of FC931677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
P2C21_ARATH1.894e-10077.48Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
P2C60_ARATH3.231e-10076.58Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
P2C58_ORYSJ1.660e-9672.52Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C11_ORYSJ1.076e-9572.52Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]
P2C70_ORYSJ9.752e-8969.68Probable protein phosphatase 2C 70 OS=Oryza sativa... [more]
Y0417_DROME9.534e-5253.06Probable protein phosphatase CG10417 OS=Drosophila... [more]
PPM1G_MACFA5.231e-5056.28Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]
PPM1G_HUMAN5.231e-5056.28Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
PPM1G_BOVIN6.832e-5055.74Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]
PPM1G_MOUSE1.165e-4955.74Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]

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Properties
Property NameValue
Genbank descriptionC34107G08EF PostHarvP1 Citrus clementina cDNA clone C34107G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931677 ID=FC931677; Name=FC931677; organism=Citrus clementina; type=EST; length=689bp
GAGAGAATTAGCTATACTGGGAGATAAAATGGACAAGTTTTCTGGCATGA
TTGAGGGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCAATGATCATTTT
GACGATTGGGCATCGGAGGAGGGTCCTCACTCAGATTTTCATGGACCAAC
TTCTGGAAGTACAGCTTGCGTAGCAATCATTAGAGACAAGCAACTCGTGG
TTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCGAGGAAGGGCCAGGCA
CTTAATCTATCTAAAGACCATAAGCCTGATCTTGAGGTTGAGAAAGATAG
AATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAGTT
TAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAAGT
TTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACTAT
TGAACTTTGTGATGATGATGAGTTTCTTGTCATAGCTTGTGATGGGATTT
GGGATTGCCTTTCAAGTCAAGAACTTGTCGATTTTGTCAGGGATCAATTA
ACCAACGAAACAAAACTATCAGTCATTTGCGAGAAAGTATTCGATCGGTG
CTTGGCTCCATCAGCTGGTGGTGAAGGATGCGACAACATGACCATGATCT
TGGTTCAGTTTAAAATCTTTCTAATATGGTCCTTCTGCG
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