FC931678

Overview
NameFC931678
Unique NameFC931678
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931678_ssr41 microsatellite FC931678_ssr41:41..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:87..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 2.330e-83
Identity = 161/217 (74.19%), Postives = 187/217 (86.18%), Query Frame = 1
Query:   94 LMALNLQSPAEIKALSFLETTRSNHRLPKLSGGFPLKRKDNATATFGRIVQCSA-----QGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            +M LN  SPAE KA+SFL+T+R N  +PKLSGGF L+R++     FG+ V+CS      Q PPPAWPGRAV E  R++WDGPKPIS++GSTGSIGTQTLDIVAE+ DKFRVVALAAGSN+TLLADQV+RFKP +VAVRNESL++E+KEALA+++ K EI+ GEQGVIE ARHP+AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL
Sbjct:    1 MMTLNSLSPAESKAISFLDTSRFNP-IPKLSGGFSLRRRNQGRG-FGKGVKCSVKVQQQQQPPPAWPGRAVPEAPRQSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVRRFKPALVAVRNESLINELKEALADLDYKLEIIPGEQGVIEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 215          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 7.016e-80
Identity = 153/209 (73.21%), Postives = 176/209 (84.21%), Query Frame = 1
Query:  115 SPAEIKALSFLETTRSNHRLP--KLSGGFPLKRKDNATATFGRIVQCSAQG--PPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            +P EIK LSFL++++SN+ L   K  GGF  KRKD+   T  + V CSAQ   PPPAWPGRA  E  R TW+GPKPISV+GSTGSIGTQTLDIVAE+ DKFR+VALAAGSN+TLLADQVK FKP++V+V++ESL+ E+KEALA  E+ PEI+ GEQG+IE ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL
Sbjct:    2 APTEIKTLSFLDSSKSNYNLNPLKFQGGFAFKRKDSG-CTAAKRVHCSAQSQSPPPAWPGRAFPEPGRMTWEGPKPISVIGSTGSIGTQTLDIVAENPDKFRIVALAAGSNVTLLADQVKAFKPKLVSVKDESLISELKEALAGFEDMPEIIPGEQGMIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 209          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 286.96 bits (733), Expect = 7.261e-77
Identity = 149/212 (70.28%), Postives = 172/212 (81.13%), Query Frame = 1
Query:   97 MALNLQS-PAEIKALSFLETTRSNHRLPKLSGGFPLKRKDNATATFGRIVQCSAQGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            MAL + S P ++ A+SFL++ R      +L    P + +D    +  R      Q PPPAWPGRAV E  R++WDGPKPIS++GSTGSIGTQTLDIVAE+ DKFRVVALAAGSN+TLLADQVK FKP++VAVRNESL+DE+KEALA+ + KPEI+ GEQGVIE ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL
Sbjct:    1 MALKVVSFPGDLAAVSFLDSNRGG-AFNQLKVDLPFQTRDRRAVSLRRTCCSMQQAPPPAWPGRAVVEPGRRSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVKTFKPKLVAVRNESLVDELKEALADCDWKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 211          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_MICAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Microcystis aeruginosa (strain NIES-843) GN=dxr PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.886e-46
Identity = 90/135 (66.67%), Postives = 116/135 (85.93%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LGSTGSIGTQTLDIV +H DKF+VV LA G+NI LL++Q+++F+PQ+VA+ NES L+++K  +++++  P ILAG++GVIE AR+ D+ +VVTGIVGCAGL PT+AAI AGKDIALANKETLIAGGP VL
Sbjct:    2 KKISILGSTGSIGTQTLDIVTDHPDKFQVVGLATGNNIQLLSEQIRQFRPQIVAINNESQLEDLKSLISDLDYTPIILAGKEGVIEVARYGDSESVVTGIVGCAGLLPTIAAITAGKDIALANKETLIAGGPVVL 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CYAA5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain ATCC 51142) GN=dxr PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.290e-45
Identity = 93/135 (68.89%), Postives = 114/135 (84.44%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K IS+LGSTGSIGTQTLDIV ++ D+F+VV LA  SN+ LLA QV++F+P++VA+ +ES L  +K+A+A+++  P ILAGEQGV E ARH DA +VVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VL
Sbjct:    2 KKISLLGSTGSIGTQTLDIVNQYPDQFQVVGLATRSNVELLATQVQQFRPEIVAICDESKLGSLKDAIASMDYSPLILAGEQGVAEVARHGDAESVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVL 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ACAM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acaryochloris marina (strain MBIC 11017) GN=dxr PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.571e-45
Identity = 86/135 (63.70%), Postives = 117/135 (86.67%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I++LGSTGSIGTQTLDIVA++ D+FR+V +AAG NI LL+ Q+++F+P++VA+ + + L ++K+A+A+V+ +P++LAGE GV+E A + DA +VVTGIVGCAGL PT+AAI+AGKDIALANKETLIAGGP VL
Sbjct:    2 KAITLLGSTGSIGTQTLDIVAQYPDQFRIVGMAAGRNIELLSQQIRQFRPEIVAIADPNQLSDLKDAIADVDPQPQLLAGEAGVVEVAAYGDAESVVTGIVGCAGLLPTIAAIKAGKDIALANKETLIAGGPVVL 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_CYAP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7424) GN=dxr PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.382e-43
Identity = 89/135 (65.93%), Postives = 114/135 (84.44%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K ISVLGSTGSIGTQTLDIVA++ D+F+VV LAAG+N+ LL+ QV +F+P++VA+ N   L+ +KE+L++++  P IL GEQG++E A + DA +VVTGIVGCAGL PT+AAI+AGKDIALANKETLIAGGP VL
Sbjct:    2 KKISVLGSTGSIGTQTLDIVAQYPDQFQVVGLAAGNNVELLSAQVHQFRPEIVAICNLDHLEVLKESLSSLDYSPIILGGEQGIVEVAGYGDAQSVVTGIVGCAGLLPTIAAIKAGKDIALANKETLIAGGPVVL 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_NOSP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxr PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.357e-43
Identity = 86/135 (63.70%), Postives = 113/135 (83.70%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I+++GSTGSIGTQTLDIV ++ D+FR+V LAAG+N+ +LA Q+++F+P++ A+ +E  L  +KEA+ +++ +P +LAGE GVIE AR+ DA TVVTGIVGCAGL PT+AAIEAGKDIALANKETLIAG P VL
Sbjct:    2 KAITLVGSTGSIGTQTLDIVTQYPDQFRIVGLAAGNNVEMLAAQIRQFRPKIAAICSEDKLPALKEAIIDLDPQPILLAGEAGVIEVARYGDAQTVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGAPVVL 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ANAVT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxr PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.252e-43
Identity = 85/135 (62.96%), Postives = 112/135 (82.96%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I+++GSTGSIGTQTLDIV+++ D+FR+V LAAGSN+ +LA+Q+++F+PQ+ A+     L  ++ A+ +++ +P +L GE GVIE AR+ DA TVVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VL
Sbjct:    2 KSITLVGSTGSIGTQTLDIVSQYPDQFRIVGLAAGSNVEMLAEQIRQFRPQIAAISAAEKLPALQAAIKDLDPQPILLGGEAGVIEVARYGDAETVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVL 136          
BLAST of FC931678 vs. ExPASy Swiss-Prot
Match: DXR_ANASP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena sp. (strain PCC 7120) GN=dxr PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.252e-43
Identity = 85/135 (62.96%), Postives = 112/135 (82.96%), Query Frame = 1
Query:  325 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVL 729
            K I+++GSTGSIGTQTLDIV+++ D+FR+V LAAGSN+ +LA+Q+++F+PQ+ A+     L  ++ A+ +++ +P +L GE GVIE AR+ DA TVVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VL
Sbjct:    3 KSITLVGSTGSIGTQTLDIVSQYPDQFRIVGLAAGSNVEMLAEQIRQFRPQIAAISAAEKLPALQAAIKDLDPQPILLGGEAGVIEVARYGDAETVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVL 137          
The following BLAST results are available for this feature:
BLAST of FC931678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 429
Match NameE-valueIdentityDescription
DXR_ARATH2.330e-8374.191-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI7.016e-8073.211-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ7.261e-7770.281-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MICAN3.886e-4666.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAA53.290e-4568.891-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACAM19.571e-4563.701-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP71.382e-4365.931-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NOSP72.357e-4363.701-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAVT5.252e-4362.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANASP5.252e-4362.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107G09EF PostHarvP1 Citrus clementina cDNA clone C34107G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931678 ID=FC931678; Name=FC931678; organism=Citrus clementina; type=EST; length=729bp
GATTATTTCTTTATTGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGA
GAGAGATAAAAAGAGGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGG
CATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAG
ACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTT
GAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTT
CTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACT
TTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAAC
TGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATA
AATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCT
GATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTC
ATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCG
AGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGCCCGACACCCAGAT
GCGGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTAC
AGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGA
CATTGATTGCTGGTGGTCCCTTTGTCCTT
back to top