FC931681

Overview
NameFC931681
Unique NameFC931681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15372 contig Ccv1_Contig15372:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931681 vs. ExPASy Swiss-Prot
Match: CX056_DANRE (UPF0428 protein CXorf56 homolog OS=Danio rerio GN=zgc:103697 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   58 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 411
            MPK  + +    D       D  +  L VYYC  CG  VL+ D Q++K+P R  DKA V+D  KH  +  N++E   V L+R EG +E+Q+R  C  CGL + Y+ +  ++     ++VDGAL
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQIEKLPMRPRDKARVIDAAKHAHKFCNVEEDEAVYLKRSEG-IERQYRKKCGKCGLLLFYQHQ--MKSTQTTFIVDGAL 119          
BLAST of FC931681 vs. ExPASy Swiss-Prot
Match: CX056_XENTR (UPF0428 protein CXorf56 homolog OS=Xenopus tropicalis GN=TNeu084h20.1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 1
Query:   58 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 411
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  DKA V+D  KH  +  N +E   V LRR +G +E+Q+R  C  C L + Y+  +    A+F  +V+GAL
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDKARVIDAAKHAHKFCNTEEEEPVYLRRPDG-IERQYRKKCSKCSLLLFYQHSQKNVAATF--IVNGAL 119          
BLAST of FC931681 vs. ExPASy Swiss-Prot
Match: CX056_BOVIN (UPF0428 protein CXorf56 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   58 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 411
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++   + LRR EG +E+Q+R  C  CGL + Y+S+   + A   ++VDGA+
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDGAKHAHKFCNTEDEETIYLRRPEG-IERQYRKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
BLAST of FC931681 vs. ExPASy Swiss-Prot
Match: CX056_HUMAN (UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   58 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 411
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++   + LRR EG +E+Q+R  C  CGL + Y+S+   + A   ++VDGA+
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEG-IERQYRKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
BLAST of FC931681 vs. ExPASy Swiss-Prot
Match: CX056_MOUSE (UPF0428 protein CXorf56 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   58 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 411
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++     LRR EG +E+Q+R  C  CGL + Y+S+   + A   ++VDGA+
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETTYLRRPEG-IERQYRKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
BLAST of FC931681 vs. ExPASy Swiss-Prot
Match: CX056_XENLA (UPF0428 protein CXorf56 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 1
Query:   58 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 411
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D+A V+   KH  +  N +E   V LRR +G +E+Q+R  C  C L + Y+  +    A+F  +V+GAL
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRARVIGAAKHAHKFCNTEEEEPVYLRRSDG-IERQYRKKCSKCSLLLFYQHSQKNAAATF--IVNGAL 119          
BLAST of FC931681 vs. ExPASy Swiss-Prot
Match: CX056_PONAB (UPF0428 protein CXorf56 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   58 MPKRTTHTYSSEDAAP----DGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDKAYVLDKTKHLARL-NIKEAGKVLLRRGEGKLEKQFRMNCIGCGLFVCYRSEETLEVASFVYVVDGAL 411
            MPK  + +    D       D  +  L VYYC  CG  VL+ D QL+K+P R  D++ V+D  KH  +  N ++   + LRR EG +E+Q+   C  CGL + Y+S+   + A   ++VDGA+
Sbjct:    1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCL-CGQMVLVLDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEG-IERQYGKKCAKCGLPLFYQSQP--KNAPVTFIVDGAV 119          
The following BLAST results are available for this feature:
BLAST of FC931681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CX056_DANRE1.088e-1337.40UPF0428 protein CXorf56 homolog OS=Danio rerio GN=... [more]
CX056_XENTR1.203e-1238.21UPF0428 protein CXorf56 homolog OS=Xenopus tropica... [more]
CX056_BOVIN1.571e-1236.59UPF0428 protein CXorf56 homolog OS=Bos taurus PE=2... [more]
CX056_HUMAN2.052e-1236.59UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56... [more]
CX056_MOUSE2.680e-1236.59UPF0428 protein CXorf56 homolog OS=Mus musculus PE... [more]
CX056_XENLA7.798e-1236.59UPF0428 protein CXorf56 homolog OS=Xenopus laevis ... [more]
CX056_PONAB1.330e-1135.77UPF0428 protein CXorf56 homolog OS=Pongo abelii PE... [more]
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Properties
Property NameValue
Genbank descriptionC34107G12EF PostHarvP1 Citrus clementina cDNA clone C34107G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931681 ID=FC931681; Name=FC931681; organism=Citrus clementina; type=EST; length=711bp
GGAAGGAGCAGGCAGAGCTGAAGCTAAAGCTCGGAGACGCAAAGAGAGAA
AACAGGAATGCCGAAGAGAACAACGCACACATACTCGAGCGAGGACGCAG
CTCCCGATGGCCCTGATTCTGATCTCTTCGTCTACTATTGCAAACACTGT
GGATCCCACGTCCTCATCACTGATACGCAATTGCAGAAAATGCCCAAAAG
GAAGACTGACAAAGCCTATGTGTTGGACAAGACCAAGCATCTTGCTAGAC
TGAACATCAAGGAAGCTGGCAAAGTTCTCCTAAGACGGGGTGAAGGCAAA
TTGGAGAAGCAATTTCGGATGAACTGTATAGGTTGTGGGCTATTTGTTTG
CTATAGGTCAGAGGAAACTTTGGAAGTGGCTTCTTTCGTCTATGTTGTCG
ACGGTGCTCTTAGTACGGTTGCTGCTGAAACCAACCCACAGGATGCTCCT
GTACCGCCCTGCATTTCGCAGTTGGAAGGAGGGCTGGTTCAAGTGGCCAT
AGAGGTGGAGGACCGTGCGCAACGCTCAGCAATTACAAGAGTGAATGCTG
ATGACGTTCGAGTTACTGTGGCGGCACCTGCAGCCCGTGGGGAAGCGAAC
AATGAACTTTTGGAGTTCATGGGAAAGGTATTGAGTCTGAGATTGAGCCA
GATGACTCTTCAAGAGGGTGGAATAACAATCAAAGCTCCTGGTGGTGAAG
ATCTGTCAGCA
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