FC931684

Overview
NameFC931684
Unique NameFC931684
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11037 contig Ccv1_Contig11037:155..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS_VIGAC (Delta-1-pyrroline-5-carboxylate synthetase OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 8.744e-93
Identity = 173/232 (74.57%), Postives = 195/232 (84.05%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            GRLGAL EQ+K+LNS G++IILVSSG VG+GRQRLR+RKL+NSS ADLQKPQ ELDGKACAAVGQ+SLMALYDTLF+QLDVTS+QLLVTD+DFRD+DFRKQL +TV+SLL L+VIP+FNENDAVSTRKAPYEDSSGIFWDNDS                 SDVEGLYSGPPS+P+SKLI+TY + KHQ EITFGDKSRVGRGGMTAKV         GIPVVITSGFA ++I
Sbjct:   37 GRLGALCEQIKQLNSLGYDIILVSSGPVGIGRQRLRFRKLINSSFADLQKPQLELDGKACAAVGQNSLMALYDTLFTQLDVTSAQLLVTDNDFRDKDFRKQLTETVKSLLALKVIPVFNENDAVSTRKAPYEDSSGIFWDNDSLSALLALELKADLLVLLSDVEGLYSGPPSDPHSKLIYTYNKEKHQNEITFGDKSRVGRGGMTAKVKAAVHAAEAGIPVVITSGFAPENI 268          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS_ACTDE (Delta-1-pyrroline-5-carboxylate synthetase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.340e-92
Identity = 173/232 (74.57%), Postives = 192/232 (82.76%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            GRLGAL EQ+ ELNSQGFE+ILV+SGAVGVGRQRLRYRKLVNSS ADLQKPQ ELDGKACAAVGQ+ L+ALYDTLFSQLDVTS+QLLVTD+DFRD +FRKQL +TV+SLL+L+VIPIFNENDAVSTRKAPYED+SGIFWDNDS                 SDVEGLYSGPPS+P SKLIHTYI+   +  ITFGDKSRVGRGGMTAKV         GIPVVITSG+A ++I
Sbjct:   36 GRLGALCEQIHELNSQGFEVILVTSGAVGVGRQRLRYRKLVNSSFADLQKPQIELDGKACAAVGQNGLLALYDTLFSQLDVTSAQLLVTDNDFRDPEFRKQLTETVESLLNLKVIPIFNENDAVSTRKAPYEDASGIFWDNDSLAALLALELKADLLVLLSDVEGLYSGPPSDPQSKLIHTYIKEMFEGLITFGDKSRVGRGGMTAKVKAAVYAAHAGIPVVITSGYATNNI 267          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS1_ARATH (Delta-1-pyrroline-5-carboxylate synthetase A OS=Arabidopsis thaliana GN=P5CSA PE=1 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.668e-92
Identity = 167/232 (71.98%), Postives = 192/232 (82.76%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            GRLGAL EQL ELNS GFE+ILVSSGAVG+GRQRLRYR+LVNSS ADLQKPQ ELDGKACA VGQSSLMA Y+T+F QLDVT++QLLV DS FRD+DFRKQL +TV+S+LDLRVIPIFNENDA+STR+APY+DSSGIFWDNDS                 SDVEGLY+GPPS+PNSKLIHT+++ KHQ EITFGDKSR+GRGGMTAKV         GIPV+ITSG++ ++I
Sbjct:   36 GRLGALCEQLAELNSDGFEVILVSSGAVGLGRQRLRYRQLVNSSFADLQKPQTELDGKACAGVGQSSLMAYYETMFDQLDVTAAQLLVNDSSFRDKDFRKQLNETVKSMLDLRVIPIFNENDAISTRRAPYQDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPNSKLIHTFVKEKHQDEITFGDKSRLGRGGMTAKVKAAVNAAYAGIPVIITSGYSAENI 267          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS_SOLLC (Delta-1-pyrroline-5-carboxylate synthetase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.402e-92
Identity = 171/232 (73.71%), Postives = 191/232 (82.33%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            GRLGAL EQL+ELNSQG+E+ILV+SGAVGVGRQRLRYRKL+NSS  DLQKPQ ELDGKACAAVGQ+ LMALYD+LFSQLDVTS+QLLVTD+DFRD DFR+QL DTV SLL L+VIPIFNENDA+STR+APYEDSSGIFWDNDS                 SDV+GLYSGPP +P+SKLI+TYI+  H+  ITFGDKSRVGRGGMTAKV         GIPVVITSGFA D+I
Sbjct:   36 GRLGALCEQLQELNSQGYEVILVTSGAVGVGRQRLRYRKLLNSSFLDLQKPQTELDGKACAAVGQNGLMALYDSLFSQLDVTSAQLLVTDNDFRDPDFRRQLNDTVNSLLSLKVIPIFNENDAISTRRAPYEDSSGIFWDNDSLAALLALELKADLLVLLSDVDGLYSGPPRDPDSKLIYTYIKEIHERVITFGDKSRVGRGGMTAKVKAAMYAAYAGIPVVITSGFATDNI 267          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS_ORYSJ (Delta-1-pyrroline-5-carboxylate synthetase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 7.402e-92
Identity = 173/232 (74.57%), Postives = 190/232 (81.90%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            GR+GAL EQ+KELNS G+E+ILV+SGAVGVGRQRLRYRKLVNSS ADLQKPQ ELDGKACAAVGQS LMALYD LF+QLDV+SSQLLVTDSDF +  FR+QL +TV+SLLDL+VIPIFNENDA+STRKAPYEDSSGIFWDNDS                 SDV+GLYSGPPSEP+SK+IHTYI+ KHQ EITFGDKSRVGRGGMTAKV         G PVVITSGF   SI
Sbjct:   36 GRVGALCEQVKELNSLGYEVILVTSGAVGVGRQRLRYRKLVNSSFADLQKPQMELDGKACAAVGQSGLMALYDMLFNQLDVSSSQLLVTDSDFENPKFREQLTETVESLLDLKVIPIFNENDAISTRKAPYEDSSGIFWDNDSLAGLLALELKADLLILLSDVDGLYSGPPSEPSSKIIHTYIKEKHQQEITFGDKSRVGRGGMTAKVKAAVLASNSGTPVVITSGFENRSI 267          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS_MESCR (Delta-1-pyrroline-5-carboxylate synthetase OS=Mesembryanthemum crystallinum GN=P5CS PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.965e-88
Identity = 163/232 (70.26%), Postives = 185/232 (79.74%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            GRLG+L EQLKELNS G+E+ILV+SGAV  GRQRLR+RKLVNSS ADLQKPQ ELDGKACAAVGQ+ LMALYDTLFSQLD+T++QLLVTD+DFRD  FR QL +TV  LLDL+V+P+ NENDAVSTRKAPYEDSSGIFWDNDS                 SDV+GLY+GPPS+P SKLI TY++ KHQ EITFGDKSR+GRGGMTAKV         GIPV+I SG A D+I
Sbjct:   33 GRLGSLCEQLKELNSDGYEVILVTSGAVSAGRQRLRFRKLVNSSFADLQKPQVELDGKACAAVGQNGLMALYDTLFSQLDLTAAQLLVTDNDFRDPSFRTQLTETVYQLLDLKVVPVLNENDAVSTRKAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVDGLYNGPPSDPRSKLISTYVKEKHQGEITFGDKSRLGRGGMTAKVKAAVYAAYAGIPVIIASGKATDNI 264          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS2_ARATH (Delta-1-pyrroline-5-carboxylate synthetase B OS=Arabidopsis thaliana GN=P5CSB PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.464e-87
Identity = 158/232 (68.10%), Postives = 189/232 (81.47%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSI 697
            GRLGA+ EQL ELNS GFE+ILVSSGAVG+GRQRLRYR+LVNSS ADLQKPQ ELDGKACA VGQSSLMA Y+T+F QLDVT +Q+LVTDS FRD+DFRKQL +TV+++L +RVIP+FNENDA+STR+APY+DS+GIFWDNDS                 SDVEGLY+GPPS+  SKLIHT+I+ KHQ EITFG+KS++GRGGMTAKV         G+PV+ITSG+A ++I
Sbjct:   36 GRLGAICEQLAELNSDGFEVILVSSGAVGLGRQRLRYRQLVNSSFADLQKPQMELDGKACAGVGQSSLMAYYETMFDQLDVTVAQMLVTDSSFRDKDFRKQLSETVKAMLRMRVIPVFNENDAISTRRAPYKDSTGIFWDNDSLAALLSLELKADLLILLSDVEGLYTGPPSDSTSKLIHTFIKEKHQDEITFGEKSKLGRGGMTAKVKAAVNAAYGGVPVIITSGYAAENI 267          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS_PONAB (Delta-1-pyrroline-5-carboxylate synthetase OS=Pongo abelii GN=ALDH18A1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 98/239 (41.00%), Postives = 135/239 (56.49%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNEL--------DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSG 679
            GRL +++EQ+  L +QG E++LV+SGAV  G+QRLR+  L++ S+   L   QN+L        + +ACAA GQS LMALY+ +F+Q  + ++Q+LVT+ DF DE  R+ L  T+  LL + ++PI N NDAV     P  D  G+      DNDS                 SDVEGL+  PP   ++KLI  +     Q+ +TFG KSRVG GGM AKV         G  VVI +G
Sbjct:   93 GRLASIVEQVSVLQNQGREMMLVTSGAVAFGKQRLRHEILLSQSVRQALHSGQNQLKEMAIPVLEARACAAAGQSGLMALYEAMFTQYSICAAQILVTNLDFHDEQKRRNLNGTLHELLRMNIVPIVNTNDAVVPPAEPNSDLQGVNVISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQS-VTFGTKSRVGMGGMEAKVKAALWALQGGTSVVIANG 330          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS_HUMAN (Delta-1-pyrroline-5-carboxylate synthetase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 98/239 (41.00%), Postives = 135/239 (56.49%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNEL--------DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSG 679
            GRL +++EQ+  L +QG E++LV+SGAV  G+QRLR+  L++ S+   L   QN+L        + +ACAA GQS LMALY+ +F+Q  + ++Q+LVT+ DF DE  R+ L  T+  LL + ++PI N NDAV     P  D  G+      DNDS                 SDVEGL+  PP   ++KLI  +     Q+ +TFG KSRVG GGM AKV         G  VVI +G
Sbjct:   93 GRLASIVEQVSVLQNQGREMMLVTSGAVAFGKQRLRHEILLSQSVRQALHSGQNQLKEMAIPVLEARACAAAGQSGLMALYEAMFTQYSICAAQILVTNLDFHDEQKRRNLNGTLHELLRMNIVPIVNTNDAVVPPAEPNSDLQGVNVISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQS-VTFGTKSRVGMGGMEAKVKAALWALQGGTSVVIANG 330          
BLAST of FC931684 vs. ExPASy Swiss-Prot
Match: P5CS_MOUSE (Delta-1-pyrroline-5-carboxylate synthetase OS=Mus musculus GN=Aldh18a1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.575e-40
Identity = 98/239 (41.00%), Postives = 134/239 (56.07%), Query Frame = 2
Query:    2 GRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNEL--------DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSG 679
            GRL +++EQ+  L +QG E++LV+SGAV  G+QRLR+  L++ S+   L   QN L        + +ACAA GQS LMALY+ +F+Q  + ++Q+LVT+ DF DE  R+ L  T+  LL + ++PI N NDAV     P  D  G+      DNDS                 SDVEGL+  PP   ++KLI  +     Q+ +TFG KSRVG GGM AKV         G  VVI +G
Sbjct:   93 GRLASIVEQVSVLQNQGREMMLVTSGAVAFGKQRLRHEILLSQSVRQALHSGQNHLKEMAIPVLEARACAAAGQSGLMALYEAMFTQYSICAAQILVTNLDFHDEQKRRNLNGTLHELLRMNIVPIVNTNDAVVPPAEPNSDLQGVNVISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQS-VTFGTKSRVGLGGMEAKVKAALWALQGGTSVVIANG 330          
The following BLAST results are available for this feature:
BLAST of FC931684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 446
Match NameE-valueIdentityDescription
P5CS_VIGAC8.744e-9374.57Delta-1-pyrroline-5-carboxylate synthetase OS=Vign... [more]
P5CS_ACTDE4.340e-9274.57Delta-1-pyrroline-5-carboxylate synthetase OS=Acti... [more]
P5CS1_ARATH5.668e-9271.98Delta-1-pyrroline-5-carboxylate synthetase A OS=Ar... [more]
P5CS_SOLLC7.402e-9273.71Delta-1-pyrroline-5-carboxylate synthetase OS=Sola... [more]
P5CS_ORYSJ7.402e-9274.57Delta-1-pyrroline-5-carboxylate synthetase OS=Oryz... [more]
P5CS_MESCR4.965e-8870.26Delta-1-pyrroline-5-carboxylate synthetase OS=Mese... [more]
P5CS2_ARATH2.464e-8768.10Delta-1-pyrroline-5-carboxylate synthetase B OS=Ar... [more]
P5CS_PONAB2.952e-4041.00Delta-1-pyrroline-5-carboxylate synthetase OS=Pong... [more]
P5CS_HUMAN2.952e-4041.00Delta-1-pyrroline-5-carboxylate synthetase OS=Homo... [more]
P5CS_MOUSE6.575e-4041.00Delta-1-pyrroline-5-carboxylate synthetase OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC34107H03EF PostHarvP1 Citrus clementina cDNA clone C34107H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931684 ID=FC931684; Name=FC931684; organism=Citrus clementina; type=EST; length=698bp
GGGAAGGCTTGGAGCTCTTTTAGAGCAGCTTAAGGAGTTAAATTCTCAAG
GCTTTGAGATTATTTTAGTTTCTTCAGGCGCTGTTGGTGTTGGCCGCCAA
AGGCTTAGATACAGAAAATTGGTCAATAGCAGCTTGGCTGATCTCCAAAA
GCCGCAGAATGAGCTTGATGGGAAGGCTTGTGCCGCAGTTGGGCAGAGTA
GTCTCATGGCTCTTTATGATACCTTGTTCAGCCAGCTTGATGTGACCTCA
TCCCAACTTCTTGTGACGGATAGTGATTTTAGGGATGAAGATTTCAGAAA
GCAACTCTATGACACTGTTCAATCATTGTTAGATTTGAGGGTTATTCCTA
TTTTTAATGAAAATGACGCAGTTAGTACTAGGAAAGCACCATACGAGGAT
TCTTCTGGTATATTTTGGGATAATGACAGTCTGGCAGGATTATTGGCTTT
GGAACTAAAAGCTGATCTTCTTGTTCTGTTGAGTGATGTAGAGGGCCTCT
ATAGTGGTCCTCCAAGTGAGCCAAATTCGAAGCTGATCCATACATATATA
AGAGCAAAACACCAAGCAGAAATAACATTTGGAGACAAGTCAAGGGTTGG
AAGAGGGGGAATGACTGCTAAGGTCAATGCAGCTTATTGTGCAGCTTGCG
CCGGTATCCCTGTTGTTATTACTAGTGGCTTTGCCATGGACAGCATCA
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