FC931695

Overview
NameFC931695
Unique NameFC931695
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931695_ssr85 microsatellite FC931695_ssr85:85..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15376 contig Ccv1_Contig15376:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931695 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.972e-59
Identity = 117/194 (60.31%), Postives = 146/194 (75.26%), Query Frame = 1
Query:  163 QVARCQSDSETGVAETEGGDLGIVGEDAQDFG-------DGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSARATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALLVLFWVWIH 723
            QVARCQSD+E   +  +     +VGE+  D         D   S  PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I+ASVHLP+DH LLVQNLT    NNA++P S +ATFPYIFAVS++LQPG FDLVG I+Y+V+  PYQS FYNGTIEVVESGG +S ESVFL+TLGI LL+L  +W +
Sbjct:   20 QVARCQSDAEDHSSLVDD----VVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAY 209          
BLAST of FC931695 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 49/143 (34.27%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  271 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIQASVHLPFDHSLLVQNLTGQAFNNATVPVSARATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTIEVVESGGFISIESVFLVTLGIALL 699
            +P   V    IFP N  +  AAG   E+LVG  N+ + ++N+  I AS++ P D S+ +QN T   F  A V     AT  Y F  S++L+P  F L+ S+ Y+     +  TF+N TI + E      ++S FL+ LG+  +
Sbjct:   34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDMDSFFLILLGLGFV 175          
The following BLAST results are available for this feature:
BLAST of FC931695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SSRA_ARATH3.972e-5960.31Translocon-associated protein subunit alpha OS=Ara... [more]
SSRA_DICDI5.430e-1634.27Translocon-associated protein subunit alpha OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionC34108A02EF PostHarvP1 Citrus clementina cDNA clone C34108A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931695 ID=FC931695; Name=FC931695; organism=Citrus clementina; type=EST; length=727bp
GACTGTTTGAACAAGGGTAGCTTTGGCGGTGTATTCACTGATCACCTTCA
TTCAATTCCAAAGCGGCGTCGTGTCAATTCAAACAACAAACAAACAACCA
TGGAGATGAAGACGTTTAGGGTTTTCTTCTTCGCTCTCCTCCTTCTAGCC
TCTCCTCTTCTTCAAGTTGCTAGGTGTCAATCGGATTCGGAAACGGGAGT
TGCAGAGACCGAAGGGGGTGATCTTGGGATTGTTGGTGAGGATGCTCAAG
ATTTTGGTGATGGGACTTTTAGCCCTGCTCCAGGAGTGGATACTGTCTGT
ATCTTCCCTAAAAATAGCGCCCGAGTGGTGGCTGCTGGAGAAGAAACTGA
ACTACTGGTTGGGATGAAAAATGATGGGGAGTCAAGCGTGAATGTGATTG
CAATTCAGGCCAGTGTTCATCTCCCTTTTGATCACAGTCTTTTGGTTCAA
AATCTCACTGGACAGGCCTTTAACAATGCAACTGTGCCGGTATCAGCTCG
GGCTACCTTTCCATACATTTTTGCTGTCAGCAAGTTCTTGCAGCCTGGAA
CTTTTGATCTTGTGGGCTCCATTGTTTACGAGGTAGACCAGCATCCTTAC
CAAAGCACCTTCTACAATGGTACCATTGAAGTTGTTGAATCTGGTGGGTT
CATCAGCATTGAGTCCGTTTTTCTTGTTACCCTTGGAATTGCGCTTCTCG
TCCTTTTTTGGGTATGGATTCATGGTC
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