FC931696

Overview
NameFC931696
Unique NameFC931696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: RSP5_YEAST (E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae GN=RSP5 PE=1 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.436e-106
Identity = 178/233 (76.39%), Postives = 209/233 (89.70%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            EIMRQ+  DLKKRLMIKFDGE+GLDYGG+SREFFFLLSHEMFNPFYCLFEYSA+DNYT+QINP+SG+NPEHLNYFKFIGRVVGL +FHRRFLD+FF+GA YKMMLRKKV LQDMEGVD +++ +L W L+N IDG+++LTFS DDE+FGE  T+DL P GR+I VT+ NK +Y+EL T+W+I+ RV+EQF AFM GFNELIP DLV VFDERELELLIGGIA+ID+EDWK+HT
Sbjct:  471 EIMRQTPEDLKKRLMIKFDGEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSLNWMLENSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHT 703          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe GN=pub1 PE=1 SV=2)

HSP 1 Score: 382.104 bits (980), Expect = 1.588e-105
Identity = 177/233 (75.97%), Postives = 211/233 (90.56%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            EIMRQSA+DLKKRLMIKFDGEDGLDYGGLSRE+FFLLSHEMFNPFYCLFEYS+ DNYTLQINPHSG+NPEHLNYFKFIGRV+GLAIFHRRF+D+FF+ +FYKM+L+KKV+LQDME +D + +R+L W LDNDI G+++LTFSV+D  FGE  TIDL P GR+I VT ENK +Y++LVT W+I KR+EEQF+AF  GF+ELIP +L+NVFDERELELLIGGI++ID+EDWK+HT
Sbjct:  429 EIMRQSATDLKKRLMIKFDGEDGLDYGGLSREYFFLLSHEMFNPFYCLFEYSSVDNYTLQINPHSGINPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEYYRSLVWILDNDITGVLDLTFSVEDNCFGEVVTIDLKPNGRNIEVTEENKREYVDLVTVWRIQKRIEEQFNAFHEGFSELIPQELINVFDERELELLIGGISEIDMEDWKKHT 661          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: PUB3_SCHPO (E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe GN=pub3 PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.643e-102
Identity = 172/233 (73.82%), Postives = 205/233 (87.98%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            EIMR SA DLKKRLMI+FDGEDGLDYGGLSREFFFLLSH+MF+P YCLFEYSA DNYTLQINPHS +NPEHLNYF+FIGRV+GLAIFHRRFLD+FF+ + YK +LRKKVSL DME +D + +R+L W L+NDI GI++LTFSV+++ FGE RT++LI  G +I VT ENK +Y++LVTEW++ KRVE+QF+AF SGF EL+ PDLVNVFDERELELLIGGI+D+DVEDWK HT
Sbjct:  448 EIMRYSAHDLKKRLMIRFDGEDGLDYGGLSREFFFLLSHKMFDPIYCLFEYSAVDNYTLQINPHSSINPEHLNYFRFIGRVIGLAIFHRRFLDAFFVVSLYKKLLRKKVSLADMESIDAEFYRSLKWVLENDITGILDLTFSVEEDHFGEVRTVELITNGENIEVTEENKKKYVDLVTEWRVSKRVEQQFNAFYSGFVELVSPDLVNVFDERELELLIGGISDVDVEDWKSHT 680          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: SMUF1_DROME (E3 ubiquitin-protein ligase Smurf1 OS=Drosophila melanogaster GN=lack PE=1 SV=3)

HSP 1 Score: 281.567 bits (719), Expect = 2.921e-75
Identity = 132/234 (56.41%), Postives = 173/234 (73.93%), Query Frame = 2
Query:    5 IMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTRL 706
            IM+  A D++KRLM+KF GE+GLDYGG++RE+  LLS EM NP Y LF+YS  D+YTLQINP SGVNP+HL+YF F+GR +G+A+FH   LD  F   FYK +L K ++L D+EGVD DLHR+L W L+++I GI+E TFSV++  FG     +L PGG  IPVT ENK +Y++L   ++ M+ +E+QF A   GF ELIP  L+  FDERELEL+IGGI+ IDV DW+ +TRL
Sbjct:  719 IMKMRAKDMRKRLMVKFKGEEGLDYGGVAREWLHLLSREMLNPQYGLFQYSRDDHYTLQINPDSGVNPDHLSYFHFVGRTLGIAVFHGHCLDGGFTTPFYKQLLNKPITLGDIEGVDPDLHRSLTWMLESNISGIIESTFSVENNSFGALVVHELKPGGASIPVTEENKREYVKLYVNYRFMRGIEQQFLALQKGFCELIPSHLLRPFDERELELVIGGISSIDVNDWRNNTRL 952          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: NED4L_PONAB (E3 ubiquitin-protein ligase NEDD4-like OS=Pongo abelii GN=NEDD4L PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.110e-74
Identity = 130/225 (57.78%), Postives = 174/225 (77.33%), Query Frame = 2
Query:   29 LKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGV-NPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            LK RL I+F+ E GLDYGG++RE+FFLLS EMFNP+Y LFEYSA DNYTLQINP+SG+ N +HL+YF FIGRV GLA+FH + LD FFI  FYKMML K+++L DME VD + + +L W L+ND   + +L F +D+E FG+   +DL P G +I VTNENK +YI+LV +W+ + RV++Q +AF+ GF EL+P DL+ +FDE ELELL+ G+ D+DV DW++H+
Sbjct:  628 LKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTEL-DLMFCIDEENFGQTYQVDLEPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHS 851          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: NED4L_MOUSE (E3 ubiquitin-protein ligase NEDD4-like OS=Mus musculus GN=Nedd4l PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.110e-74
Identity = 130/225 (57.78%), Postives = 174/225 (77.33%), Query Frame = 2
Query:   29 LKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGV-NPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            LK RL I+F+ E GLDYGG++RE+FFLLS EMFNP+Y LFEYSA DNYTLQINP+SG+ N +HL+YF FIGRV GLA+FH + LD FFI  FYKMML K+++L DME VD + + +L W L+ND   + +L F +D+E FG+   +DL P G +I VTNENK +YI+LV +W+ + RV++Q +AF+ GF EL+P DL+ +FDE ELELL+ G+ D+DV DW++H+
Sbjct:  673 LKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTEL-DLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHS 896          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: NED4L_HUMAN (E3 ubiquitin-protein ligase NEDD4-like OS=Homo sapiens GN=NEDD4L PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.110e-74
Identity = 130/225 (57.78%), Postives = 174/225 (77.33%), Query Frame = 2
Query:   29 LKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGV-NPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHT 700
            LK RL I+F+ E GLDYGG++RE+FFLLS EMFNP+Y LFEYSA DNYTLQINP+SG+ N +HL+YF FIGRV GLA+FH + LD FFI  FYKMML K+++L DME VD + + +L W L+ND   + +L F +D+E FG+   +DL P G +I VTNENK +YI+LV +W+ + RV++Q +AF+ GF EL+P DL+ +FDE ELELL+ G+ D+DV DW++H+
Sbjct:  644 LKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTEL-DLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHS 867          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: SMUF2_MOUSE (E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus GN=Smurf2 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.396e-74
Identity = 127/235 (54.04%), Postives = 169/235 (71.91%), Query Frame = 2
Query:    2 EIMRQSASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGVNPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTRL 706
            ++M+    DL KRLMIKF GE+GLDYGG++RE+ +LLSHEM NP+Y LF+YS  D YTLQINP S VNPEHL+YF F+GR++G+A+FH  ++D  F   FYK +L K ++L DME VD DLH +L W L+NDI G+++ TF V+   +GE    +L P G+ IPVT ENK +Y+ L   W+ ++ +E QF A   GFNE+IP  L+  FDE+ELEL+I G+  IDV DWK +TRL
Sbjct:  409 QVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVTEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVSDWKVNTRL 643          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: NEDD4_HUMAN (E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4 PE=1 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 9.396e-74
Identity = 131/229 (57.21%), Postives = 173/229 (75.55%), Query Frame = 2
Query:   20 ASDLKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGV-NPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703
            A  LK RL I+FDGE GLDYGG++RE+FFL+S EMFNP+Y LFEYSA DNYTLQINP+SG+ N +HL+YFKFIGRV G+A++H + LD FFI  FYKMML K ++L DME VD + + +L W L+ND   + +L F +D+E FG+    +L  GG +I VTN+NK +YI LV +W+ + R+++Q  AF  GF ELIP DL+ +FDE ELELL+ G+ D+DV DW+EHT+
Sbjct:  985 ADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWILENDPTEL-DLRFIIDEELFGQTHQHELKNGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTK 1212          
BLAST of FC931696 vs. ExPASy Swiss-Prot
Match: NEDD4_MOUSE (E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1 SV=3)

HSP 1 Score: 276.174 bits (705), Expect = 1.227e-73
Identity = 130/226 (57.52%), Postives = 173/226 (76.55%), Query Frame = 2
Query:   29 LKKRLMIKFDGEDGLDYGGLSREFFFLLSHEMFNPFYCLFEYSAHDNYTLQINPHSGV-NPEHLNYFKFIGRVVGLAIFHRRFLDSFFIGAFYKMMLRKKVSLQDMEGVDEDLHRNLAWTLDNDIDGIVELTFSVDDEKFGERRTIDLIPGGRDIPVTNENKPQYIELVTEWKIMKRVEEQFDAFMSGFNELIPPDLVNVFDERELELLIGGIADIDVEDWKEHTR 703
            LK RL I+FDGE GLDYGG++RE+FFL+S EMFNP+Y LFEYSA DNYTLQINP+SG+ N +HL+YFKFIGRV G+A++H + LD FFI  FYKMML+K ++L DME VD + + +L W L+ND   + +L F +D+E FG+    +L  GG +I VTN+NK +YI LV +W+ + R+++Q  AF  GF ELIP DL+ +FDE ELELL+ G+ D+DV DW+EHT+
Sbjct:  556 LKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLQKLITLHDMESVDSEYYSSLRWILENDPTEL-DLRFIIDEELFGQTHQHELKTGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTK 780          
The following BLAST results are available for this feature:
BLAST of FC931696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RSP5_YEAST1.436e-10676.39E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces ... [more]
PUB1_SCHPO1.588e-10575.97E3 ubiquitin-protein ligase pub1 OS=Schizosaccharo... [more]
PUB3_SCHPO1.643e-10273.82E3 ubiquitin-protein ligase pub3 OS=Schizosaccharo... [more]
SMUF1_DROME2.921e-7556.41E3 ubiquitin-protein ligase Smurf1 OS=Drosophila m... [more]
NED4L_PONAB1.110e-7457.78E3 ubiquitin-protein ligase NEDD4-like OS=Pongo ab... [more]
NED4L_MOUSE1.110e-7457.78E3 ubiquitin-protein ligase NEDD4-like OS=Mus musc... [more]
NED4L_HUMAN1.110e-7457.78E3 ubiquitin-protein ligase NEDD4-like OS=Homo sap... [more]
SMUF2_MOUSE9.396e-7454.04E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus... [more]
NEDD4_HUMAN9.396e-7457.21E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens ... [more]
NEDD4_MOUSE1.227e-7357.52E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC34108A03EF PostHarvP1 Citrus clementina cDNA clone C34108A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931696 ID=FC931696; Name=FC931696; organism=Citrus clementina; type=EST; length=711bp
CGAGATCATGCGCCAGAGTGCATCCGATCTTAAGAAGCGCCTAATGATCA
AGTTCGATGGAGAAGATGGCCTCGACTATGGTGGTCTTTCACGTGAATTC
TTCTTCCTCCTTTCCCATGAAATGTTCAATCCTTTCTACTGTCTCTTCGA
ATACTCTGCCCACGATAATTATACCTTGCAGATTAATCCCCACTCGGGCG
TCAACCCCGAGCATCTCAATTACTTCAAGTTCATCGGCCGAGTGGTTGGT
CTGGCTATCTTCCACCGTCGTTTCTTGGATTCCTTCTTCATTGGAGCTTT
CTATAAGATGATGTTGCGGAAGAAAGTCAGTCTTCAAGATATGGAAGGTG
TGGATGAGGATCTGCACCGCAATTTGGCATGGACACTGGATAATGATATT
GACGGAATTGTGGAACTCACATTTTCGGTCGACGATGAGAAGTTTGGCGA
GCGTCGCACTATTGATTTGATACCCGGTGGCCGGGATATTCCCGTCACCA
ACGAGAACAAGCCACAGTACATTGAGTTGGTAACGGAATGGAAGATCATG
AAGCGAGTCGAGGAGCAGTTCGACGCCTTCATGTCCGGCTTCAACGAGCT
TATTCCCCCTGATCTTGTCAACGTCTTTGATGAGCGCGAACTTGAGTTGC
TCATTGGTGGTATTGCCGACATTGATGTCGAAGACTGGAAAGAGCACACC
CGACTACCGCG
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