FC931701

Overview
NameFC931701
Unique NameFC931701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15059 contig Ccv1_Contig15059:277..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931701 vs. ExPASy Swiss-Prot
Match: EIF3M_DICDI (Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 51/161 (31.68%), Postives = 90/161 (55.90%), Query Frame = 1 
Query:   88 LASLMLTSADLMFS--KVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLE-NPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLQESRSSSKDSFQFLTKYLATFSGEDA 561
            L+ ++    + +F   K SDKD+E  F VI  ++ K E+ DE++ +++ I   +   P +   +++KIL NL+N  +     R+ ++   + LA +    E +      IDS+L++WN+ I+ KR L+  I+N+ +E +     S QFL KYL TF+ ED+
Sbjct:   50 LSKIVSNETEFLFKECKDSDKDIEGFFNVILTILHKLENEDEINIVSQKIRDSLSAHPTENSQLKIKILTNLFNSFQPKSTQRYDIFFALVKLASDSNNLEFVKYQITDIDSWLEDWNVSIQQKRKLYKLISNIFKEKQRML--SHQFLVKYLQTFTKEDS 208
The following BLAST results are available for this feature:
BLAST of FC931701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3M_DICDI1.822e-1731.68Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionC34108A08EF PostHarvP1 Citrus clementina cDNA clone C34108A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931701 ID=FC931701; Name=FC931701; organism=Citrus clementina; type=EST; length=575bp
GATGCCGGTCCTGAGGCTGCAGAAGAACAAGTTAATAGGCTTTGTTTGGA
AGCACAAGAAAGCATGGTCATGGGGAGATGGATGGATTTGGCTTCTCTGA
TGCTCACTTCGGCAGACTTGATGTTCTCAAAAGTGTCTGATAAAGATCTT
GAGTGTATCTTCACCGTTATCTGCAATCTTGTCACAAAGCCTGAAAGCCT
TGATGAAGTGCATGAGATGACAAAACTTATATCTGGGAAAATCATTCAAC
AGCCAAATGACAAGCCTGCAATGCGCTTGAAGATCTTGTTCAATCTCTAT
AATTTGCTAGAGAATCCCTACAGCCGGTTCTTTGTATACATGAAAGCCCT
TAATTTGGCAGTTAATGGAAAAGTGACTGAACATATAATACCTTCTTTCA
AAAAGATAGATAGCTTCTTGAAGGAGTGGAATATTGATATCAAGGATAAA
AGAGCACTTTTTCTTGGCATTGCTAATGTTCTNCAAGAAAGTAGAAGCTC
ATCCAAGGATTCTTTTCAATTCCTGACTAAGTATTTGGCAACTTTCTCTG
GTGAAGATGCTCATACCATGGATGA
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