FC931706

Overview
NameFC931706
Unique NameFC931706
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:7..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.969e-57
Identity = 102/181 (56.35%), Postives = 123/181 (67.96%), Query Frame = 2
Query:  170 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC     YYGRGP+QL+WNYNY +C                 + DPV++FK+AIWFWMT Q PKPSCH VI  +W+P
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQC--GRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQP 247          
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 1.018e-56
Identity = 101/181 (55.80%), Postives = 123/181 (67.96%), Query Frame = 2
Query:  170 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC    +YYGRGP+QL+WNYNY  C                 A D V++FK+AIWFWMTAQPPKPSCH VI  +W+P
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLC--GRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQP 262          
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.737e-56
Identity = 108/199 (54.27%), Postives = 130/199 (65.33%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W P
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTP 251          
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.737e-56
Identity = 103/177 (58.19%), Postives = 125/177 (70.62%), Query Frame = 2
Query:  182 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC  +  YPC  GK YYGRGP+QL+WNYNY  C                 ATD VLSFK+A+WFWMT Q PKPSCH+V+T  W+P
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPC--GEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQP 178          
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.737e-56
Identity = 105/200 (52.50%), Postives = 128/200 (64.00%), Query Frame = 2
Query:  116 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY +                  ATD V+SFK+A WFWMT Q PKPSCH VIT  W P
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQA--GKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTP 241          
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.268e-56
Identity = 111/192 (57.81%), Postives = 125/192 (65.10%), Query Frame = 2
Query:  137 GERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPC-RGKYY-GRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HETTGGW DAP G YAWGYC++ EI+   PYC  + NY C  GK Y GRGPIQL+WNYNY  C                  TDPV+SFK+AIWFWM  Q PKPSCH VIT  W P
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC--GDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTP 264          
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.053e-56
Identity = 109/204 (53.43%), Postives = 131/204 (64.22%), Query Frame = 2
Query:  116 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+SFKSA+WFWMTAQ PKPS H+VIT  W P
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTP 250          
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.126e-55
Identity = 108/201 (53.73%), Postives = 130/201 (64.68%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+P
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQP 251          
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.920e-55
Identity = 102/182 (56.04%), Postives = 123/182 (67.58%), Query Frame = 2
Query:  167 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+P
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQP 256          
BLAST of FC931706 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.297e-55
Identity = 108/195 (55.38%), Postives = 130/195 (66.67%), Query Frame = 2
Query:  134 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  R RE+AAF AQT HETTG  GW  AP G Y WGYC+  E++ P+ YC  + NYPC  GK Y+GRGP+QLTWNYNY +C                 ATDP +SFKSA WFWMT Q PKPSCH+VI   W P
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN-PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQC--GRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSP 248          
The following BLAST results are available for this feature:
BLAST of FC931706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_BRANA5.969e-5756.35Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_ARATH1.018e-5655.80Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_PHAVU1.737e-5654.27Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIT_CARPA1.737e-5658.19Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_VITVI1.737e-5652.50Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR2.268e-5657.81Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI5_PHAVU5.053e-5653.43Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_TOBAC1.126e-5553.73Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC1.920e-5556.04Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_THECC7.297e-5555.38Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC34108B01EF PostHarvP1 Citrus clementina cDNA clone C34108B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931706 ID=FC931706; Name=FC931706; organism=Citrus clementina; type=EST; length=701bp
GACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGA
GGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
CGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCC
GTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAA
GACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCAC
AGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCA
T
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