FC931710

Overview
NameFC931710
Unique NameFC931710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15378 contig Ccv1_Contig15378:1..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 8.936e-110
Identity = 193/214 (90.19%), Postives = 203/214 (94.86%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKG 642
            QFIYADLGDAKAVNK F+ENAFDAVMHFAAVAYVGEST  PLKYYHNITSNTLVVLE+MA HGV TLIYSSTCATYGEP+ MPITEETPQ PINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVI SDPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADGTCVRDYIDV DLVDAHVKAL++A+P+KVGIYNVGTGKG
Sbjct:  125 QFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKG 338          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 5.792e-109
Identity = 191/215 (88.84%), Postives = 202/215 (93.95%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 645
            QFIYADLGDAKAV+K FSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLE++ARH V  LIYSSTCATYGEP+KMPI E TPQ PINPYGKAKKMAED+ILDFSKNSDMAVMILRYFNVI SDPEGRLGEAP+PELREHGRISGACFDAARG+I GL+VKGTDY T DGTCVRDYIDV DLVDAHVKALE+A+P+ VGIYNVGTGKGR
Sbjct:  124 QFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAVARHKVKKLIYSSTCATYGEPDKMPIVEVTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAARGVIPGLQVKGTDYKTGDGTCVRDYIDVTDLVDAHVKALEKAKPRNVGIYNVGTGKGR 338          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 392.889 bits (1008), Expect = 7.565e-109
Identity = 193/214 (90.19%), Postives = 200/214 (93.46%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKG 642
            QFIYADLGDA AVNK FSENAFDAVMHFAAVAYVGEST  PLKYYHNITSNTLVVLE+MA HGV TLIYSSTCATYGEPEKMPITEETPQ PINPYGKAKKMAEDIILDFSKNS MAVMILRYFNVI SDPEGRLGEAPRPEL EHGRISGACFDAARGII GL++KGTDY T DGTCVRDYIDV DLVDAHVKALE+A+P+KVGI+NVGTGKG
Sbjct:  124 QFIYADLGDANAVNKIFSENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYGEPEKMPITEETPQVPINPYGKAKKMAEDIILDFSKNSIMAVMILRYFNVIGSDPEGRLGEAPRPELSEHGRISGACFDAARGIIPGLQIKGTDYKTVDGTCVRDYIDVTDLVDAHVKALEKAKPRKVGIFNVGTGKG 337          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 9.247e-107
Identity = 190/215 (88.37%), Postives = 198/215 (92.09%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 645
            QFIYADLGD  AV K FSENAFDAVMHFAAVAYVGESTL PLKYYHNITSNTL VLE+MARH V  LIYSSTCATYGEPEKMPITE+TPQ PINPYGKAKKMAED+ILDFSKNSDMAVMILRYFNVI SDP GRLGEAPRPELRE GRISGACFDAARG I GL+VKGTDY T+DGTC+RDYIDV DLVDAHVKALE+AQP+KVGIYNVGTGKGR
Sbjct:  149 QFIYADLGDPLAVEKIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLEAMARHKVKKLIYSSTCATYGEPEKMPITEDTPQVPINPYGKAKKMAEDMILDFSKNSDMAVMILRYFNVIGSDPGGRLGEAPRPELREQGRISGACFDAARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVKALEKAQPRKVGIYNVGTGKGR 363          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 5.994e-106
Identity = 188/215 (87.44%), Postives = 198/215 (92.09%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 645
            QFIYADLGDAKAVNK FSENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTL VLE+MA + V TLIYSSTCATYGEP+ MPITE TPQ PINPYGKAKKMAEDIILDFSK S+MAVMILRYFNVI SDP GRLGEAPRPELREHGRISGACFDAA GII GLKV+GTDY TADGTC+RDYIDV DLVDAHVKAL++AQP KVGIYNVGTG GR
Sbjct:  104 QFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAYNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMILRYFNVIGSDPGGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGR 318          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 379.793 bits (974), Expect = 6.627e-105
Identity = 189/217 (87.10%), Postives = 199/217 (91.71%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSKN--SDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 645
            QFIYADLGD KAVN+ F+ENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTLVVLE+MA H V TLIYSSTCATYGEPEKMPITE TPQ PINPYGKAKKMAEDIILDFSK+  +DMAVMILRYFNVI SDPEGRLGEAP+PELREHGRISGACFDAA GII GLKVKGTDY T DGTCVRDYIDV DLVDAHVKAL +A+  KVGIYNVGTGKGR
Sbjct:  127 QFIYADLGDPKAVNRIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVLEAMAAHNVRTLIYSSTCATYGEPEKMPITEGTPQFPINPYGKAKKMAEDIILDFSKSKKADMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNKAERGKVGIYNVGTGKGR 343          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 1.928e-104
Identity = 185/216 (85.65%), Postives = 196/216 (90.74%), Query Frame = 1
Query:    1 QFIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGR 645
            QFIYADLGD K VNK F+ENAFDAVMHFAAVAYVGESTL+PL+YYHNITSNTL++LE+MA HGV TLIYSSTCATYGEPEKMPI E T Q PINPYGKAKKMAEDIILDF+K   DMAVMILRYFNVI SDPEGRLGEAPRPELREHGRISGACFDAA GII GLKVKGTDY T DGTC+RDYIDV DLVDAHVKAL +A+P KVGIYNVGTG+GR
Sbjct:  118 QFIYADLGDQKTVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLILEAMASHGVKTLIYSSTCATYGEPEKMPIVETTRQLPINPYGKAKKMAEDIILDFTKGRKDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYPTTDGTCIRDYIDVTDLVDAHVKALNKAEPSKVGIYNVGTGRGR 333          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.099e-42
Identity = 93/216 (43.06%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    4 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILD-FSKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVG--IYNVGTGKG 642
            F   DL D  A+ K FSE  FDAV+HFA +  VGES   PL YY+N    T+ +LE MA+HG   L++SS+   YG P+++P TEE P + +NPYG+ K   E+I  D +  + +  +++LRYFN + + P G +GE PR        +       A G    L V G DY+T DGT VRDYI V DL D H+ AL + +  K+G  +YN+GTG G
Sbjct:   60 FHQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYFNPVGAHPSGDIGEDPR---GIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNG 272          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.675e-42
Identity = 94/215 (43.72%), Postives = 126/215 (58.60%), Query Frame = 1
Query:    4 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDF-SKNSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKG 642
            F  ADL D +AV+  F+EN  +AV+HFA +  VGES   PLKYYHN  + T ++ E+M ++GV  +++SS+   YG PE  PITE+ P    NPYG+ K M E I+ D  + +++ +V +LRYFN   + P GR+GE P         +       A G +  L V G DY T DGT VRDYI V DL + HVKALE+         YN+GTG G
Sbjct:   54 FYEADLLDREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIVFSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPFGAHPSGRIGEDPN---GIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAEGHVKALEKVLNSTGADAYNLGTGTG 265          
BLAST of FC931710 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.958e-41
Identity = 93/216 (43.06%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    4 FIYADLGDAKAVNKFFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLESMARHGVDTLIYSSTCATYGEPEKMPITEETPQAPINPYGKAKKMAEDIILDFSK-NSDMAVMILRYFNVISSDPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVG--IYNVGTGKG 642
            F   DL D  A+ K FSE  FDAV+HFA +  VGES   PL YY+N    T+ +LE MA++G   L++SS+   YG P+++P TEE+P +  NPYG+ K   E+I  D  + +S+  +++LRYFN + + P G +GE P   L     +       A G    L V GTDY T DGT VRDYI V DL D H+ AL +    K+   +YN+GTG G
Sbjct:   59 FHQVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGCKNLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLRYFNPVGAHPSGYIGEDP---LGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHVMDLADGHIAALRKLDDLKISCEVYNLGTGNG 271          
The following BLAST results are available for this feature:
BLAST of FC931710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ARAE1_ARATH8.936e-11090.19UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]
ARAE3_ARATH5.792e-10988.84Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
ARAE2_ARATH7.565e-10990.19Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
ARAE4_ARATH9.247e-10788.37Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
ARAE2_ORYSJ5.994e-10687.44Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
ARAE1_ORYSJ6.627e-10587.10Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
ARAE3_ORYSJ1.928e-10485.65Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
GALE2_ARATH2.099e-4243.06UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GALE_BACSU4.675e-4243.72UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE3_ARATH3.958e-4143.06UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34108B05EF PostHarvP1 Citrus clementina cDNA clone C34108B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931710 ID=FC931710; Name=FC931710; organism=Citrus clementina; type=EST; length=646bp
CAGTTTATTTATGCTGACCTGGGTGATGCTAAAGCTGTTAACAAATTTTT
TTCAGAAAATGCATTTGATGCTGTAATGCATTTTGCAGCTGTTGCTTATG
TTGGAGAAAGCACCCTTGATCCTCTCAAATATTATCACAACATTACGTCA
AATACCTTGGTAGTATTGGAGTCAATGGCCAGACATGGCGTGGATACTTT
GATATATTCCAGTACATGCGCAACATACGGAGAGCCTGAAAAGATGCCCA
TTACTGAAGAAACTCCACAGGCTCCAATTAATCCATATGGTAAAGCTAAG
AAGATGGCAGAAGATATCATCCTGGACTTCTCTAAAAATTCAGACATGGC
AGTTATGATCCTAAGGTACTTCAATGTCATCAGTTCTGATCCAGAGGGTA
GATTAGGTGAAGCTCCCAGACCTGAATTGCGTGAGCATGGGCGAATATCA
GGTGCATGTTTTGATGCAGCTCGTGGTATTATTGCTGGGCTGAAGGTCAA
AGGAACAGACTACAGTACAGCAGATGGAACTTGTGTTCGTGATTATATTG
ACGTCAATGATCTGGTTGACGCTCATGTCAAAGCTCTTGAGAGGGCACAA
CCTAAGAAAGTTGGAATCTATAATGTTGGCACGGGAAAAGGGAGAT
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