FC931711

Overview
NameFC931711
Unique NameFC931711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931711_ssr86 microsatellite FC931711_ssr86:86..97. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931711 vs. ExPASy Swiss-Prot
Match: ER25B_DICDI (Putative C-4 methylsterol oxidase DDB_G0269788 OS=Dictyostelium discoideum GN=DDB_G0269788 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 9.082e-11
Identity = 37/142 (26.06%), Postives = 65/142 (45.77%), Query Frame = 3 
Query:  228 NLTFAETLWYNYSANKSDYFLYCHNILFLFLVFSVAP-LPFVVIESLRSDSFDKYKIQPKVRLSFSEMVRCYKDVMRMFFLVVGPLQLVSFPSVQMVGIRTGLPLPSGWEILAQLVVYFMVEDYTNYWIHRFLHCKWGYEKI 650
            +L F E  W+ +     + FL  +       VF     +PF + + +      KYKIQP  +  +     C   V+     V  P+  +  P+++ +G+    PLPS   ++  +   F++ED+  YW+HR LH  + Y+ I
Sbjct:    5 SLKFIEPYWFKFVDYYGEDFLITYGTFIAHEVFYFGSFIPFFLCDFM--PFLQKYKIQPTKKNEWKTQFNCIFKVLMTHIFVQLPMMYIFDPAIKAIGLSARAPLPSIPYLIFTIACCFLIEDFYFYWVHRALHHGFWYKHI 144

HSP 2 Score: 22.7126 bits (47), Expect = 9.082e-11
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 2 
Query:  653 RVHHEYTAPIGFAA 694
            +VHH++ AP G  A
Sbjct:  146 KVHHDHAAPFGMTA 159
The following BLAST results are available for this feature:
BLAST of FC931711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ER25B_DICDI9.082e-1126.06Putative C-4 methylsterol oxidase DDB_G0269788 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC34108B06EF PostHarvP1 Citrus clementina cDNA clone C34108B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931711 ID=FC931711; Name=FC931711; organism=Citrus clementina; type=EST; length=701bp
GATAATTTTAACAAACACAAACTACAGACCCCCCCTCTGCCAGCGCATCG
CAAAACCGCACACAAACAAAAAAAAAAGGCCGCAGCTCCTCCTCCTCACC
CTCCCCCAGCCCCCATCCTAATCAATTCTCGCTCTCCTCGACGCGCCACC
AGACTCCGATCTTCGCTGCTCGGACTAAAATGCTGCCGTACGCTACCATC
GAAGACGCGGCCGCAGCACTTGGACGGAACCTGACGTTCGCGGAGACGTT
ATGGTACAATTACTCGGCGAACAAATCGGATTACTTCCTGTACTGCCACA
ACATTCTGTTTCTGTTTTTGGTGTTTTCTGTTGCGCCGCTGCCCTTTGTC
GTTATTGAATCGCTGCGATCTGATAGTTTCGATAAGTACAAGATTCAGCC
GAAAGTTAGGCTCTCTTTCTCCGAGATGGTTCGCTGCTACAAGGATGTTA
TGCGCATGTTCTTTCTCGTTGTGGGCCCTCTTCAACTCGTTTCTTTCCCT
TCCGTTCAGATGGTTGGGATTCGGACTGGGTTGCCGCTGCCGTCAGGGTG
GGAGATTCTTGCACAATTGGTAGTTTATTTCATGGTAGAGGACTATACCA
ATTACTGGATTCACAGATTTCTCCATTGTAAATGGGGTTATGAGAAAATT
CCCGCGTTCATCATGAATACACCGCTCCCATTGGATTTGCTGCACATATG
C
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