FC931713

Overview
NameFC931713
Unique NameFC931713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931713_ssr24 microsatellite FC931713_ssr24:24..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15379 contig Ccv1_Contig15379:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 1.465e-97
Identity = 166/184 (90.22%), Postives = 175/184 (95.11%), Query Frame = 1
Query:   88 MALKLSPFTTQTQKFPSFALPQMGSLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 639
            MALKL+PF +QTQK PSFALP M S RSPKF MASTL+S +KEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKS+++WAE NILVHLKPVEKCWQPQDFLPDPASDGFDEQV+ELRERAKE+PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGAS TSWAIWTRAWTAEENRHGDLLN
Sbjct:    1 MALKLNPFLSQTQKLPSFALPPMASTRSPKFYMASTLKSGSKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLN 184          

HSP 2 Score: 30.0314 bits (66), Expect = 1.465e-97
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDMRQ+ +
Sbjct:  186 YLYLSGRVDMRQIEK 200          
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.669e-93
Identity = 161/184 (87.50%), Postives = 171/184 (92.93%), Query Frame = 1
Query:   88 MALKLSPFTTQTQKFPSFALPQMGSLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 639
            MAL+L+P  TQT     F+LPQM SLRSP+F MASTLRS +KEVEN+KKPF PPREVHVQVTHSMPPQKIEIF+S+EDWAE NIL HLKPVEKCWQPQDFLPDP+SDGF+EQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN
Sbjct:    1 MALRLNPIPTQT-----FSLPQMASLRSPRFRMASTLRSGSKEVENIKKPFTPPREVHVQVTHSMPPQKIEIFQSLEDWAEENILAHLKPVEKCWQPQDFLPDPSSDGFEEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 179          

HSP 2 Score: 28.8758 bits (63), Expect = 4.669e-93
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDM+Q+ +
Sbjct:  181 YLYLSGRVDMKQIEK 195          
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 5.592e-91
Identity = 154/184 (83.70%), Postives = 168/184 (91.30%), Query Frame = 1
Query:   88 MALKLSPFTTQTQKFPSFALPQMGSLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 639
            MALK  P T+Q+ K PSF +PQ+ SLRSPKF MASTLRS ++EVE LKKPFMPPREVH+QVTHSMPPQK+EIFKS+EDWAE N+LVHLKPVE+CWQPQDFLPD A +GF EQV+ELRERAKELPD+YFVVLVGDMITEEALPTYQTMLNTLDGVRDETGAS T WAIWTRAWTAEENRHGDLLN
Sbjct:    1 MALKFHPLTSQSPKLPSFRMPQLASLRSPKFVMASTLRSTSREVETLKKPFMPPREVHLQVTHSMPPQKMEIFKSLEDWAEENLLVHLKPVERCWQPQDFLPDSAFEGFHEQVRELRERAKELPDEYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLN 184          

HSP 2 Score: 29.6462 bits (65), Expect = 5.592e-91
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDMRQ+ +
Sbjct:  186 YLYLSGRVDMRQVEK 200          
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 1.358e-89
Identity = 150/185 (81.08%), Postives = 170/185 (91.89%), Query Frame = 1
Query:   88 MALKLSPFTTQTQKFPSFALPQMGSLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNS 642
            MAL+++P T Q++++ SF+ P+  +LRSPKF+MASTL S+T +V+N KKPF PPREVHVQVTHSMPPQKIEIFKS+E WAE NILVHLKPVEKCWQ QDFLPDPAS+GFDEQVKELR RAKE+PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLT WA+WTRAWTAEENRHGDLL++
Sbjct:    1 MALRITPVTLQSERYRSFSFPKKANLRSPKFAMASTLGSSTPKVDNAKKPFQPPREVHVQVTHSMPPQKIEIFKSIEGWAEQNILVHLKPVEKCWQAQDFLPDPASEGFDEQVKELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAVWTRAWTAEENRHGDLLHT 185          

HSP 2 Score: 30.4166 bits (67), Expect = 1.358e-89
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDMRQ+++
Sbjct:  186 YLYLSGRVDMRQIQK 200          
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 1.777e-86
Identity = 148/184 (80.43%), Postives = 159/184 (86.41%), Query Frame = 1
Query:   88 MALKLSPFTTQTQKFPSFALPQMGSLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 639
            MAL  +   +++QK P FALP   +LRSPKFSM ST+ S +KEV NLKKPF PP+EV VQ+THSMPP KIEIFKS+E WAENNIL HLKPVEKCWQP DFLPDP SDGF EQVKELRERAKE+PDDYFVVLVGDMITEEAL TYQTMLNTLDG RDETGASLT WAIWTRAWTAEENRHGDLLN
Sbjct:    1 MALNFNAIASKSQKLPCFALPPKATLRSPKFSMISTIPSGSKEVGNLKKPFTPPKEVPVQITHSMPPHKIEIFKSLEGWAENNILTHLKPVEKCWQPADFLPDPNSDGFHEQVKELRERAKEIPDDYFVVLVGDMITEEALSTYQTMLNTLDGTRDETGASLTPWAIWTRAWTAEENRHGDLLN 184          

HSP 2 Score: 31.187 bits (69), Expect = 1.777e-86
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDMRQ+ R
Sbjct:  186 YLYLSGRVDMRQIER 200          
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STAD_BRANA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 5.154e-83
Identity = 146/186 (78.49%), Postives = 161/186 (86.56%), Query Frame = 1
Query:   88 MALKLSPFTTQTQKFPSFALPQMGSLRSPKFSM--ASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 639
            MALKL+P  +Q   FPS A P + + RSPKF    +S+   ++KEVE+LKKPF PP+EVHVQV HSMPPQKIEIFKSMEDWAE N+L  LK VEK WQPQDFLPDPASDGF++QV+ELRERA+ELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGAS TSWAIWTRAWTAEENRHGDLLN
Sbjct:    1 MALKLNPLASQPYNFPSSARPPISTFRSPKFLCLASSSPALSSKEVESLKKPFTPPKEVHVQVLHSMPPQKIEIFKSMEDWAEQNLLTQLKDVEKSWQPQDFLPDPASDGFEDQVRELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLN 186          

HSP 2 Score: 30.0314 bits (66), Expect = 5.154e-83
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDMRQ+ +
Sbjct:  188 YLYLSGRVDMRQIEK 202          
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STAD_HELAN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 3.311e-82
Identity = 144/184 (78.26%), Postives = 159/184 (86.41%), Query Frame = 1
Query:   88 MALKLSPFTTQTQKFPSFALPQMGSLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 639
            MA++++  T Q+  + SFA PQ   LRSPKF+MAST+ S T +VE+ KKPF PPREVH QV HSMPPQKIEIFKSME WAENNILVHLKPVEKCWQ QDFLPDPASDGF EQV+ELR RAKE+PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGA+L    +WTRAWTAEENRHGDLL+
Sbjct:    1 MAIRINTATFQSDLYRSFAFPQPKPLRSPKFAMASTIGSATTKVESTKKPFTPPREVHQQVLHSMPPQKIEIFKSMEGWAENNILVHLKPVEKCWQAQDFLPDPASDGFMEQVEELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGATLLLGLVWTRAWTAEENRHGDLLH 184          

HSP 2 Score: 30.4166 bits (67), Expect = 3.311e-82
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDMRQ+++
Sbjct:  186 YLYLSGRVDMRQIQK 200          
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STADS_BRANA (Acyl-[acyl-carrier-protein] desaturase, seed specific, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 4.720e-81
Identity = 144/187 (77.01%), Postives = 160/187 (85.56%), Query Frame = 1
Query:   88 MALKLSPFTTQTQKFPSFALPQMGSLRSPKF---SMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 639
            MALK +P  +Q  K  S A P + + RSPKF   + +S+   ++KEVE+LKKPF PPREVH+QV HSMPPQKIEIFKSMED AE N+L HLK VEK WQPQDFLPDPASDGF++QVKELRERA+ELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGAS TSWA+WTRAWTAEENRHGDLLN
Sbjct:    1 MALKFNPLVSQPYKLASSARPPVSTFRSPKFLCLASSSSPALSSKEVESLKKPFTPPREVHLQVLHSMPPQKIEIFKSMEDRAEQNLLPHLKDVEKSWQPQDFLPDPASDGFEDQVKELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAVWTRAWTAEENRHGDLLN 187          

HSP 2 Score: 30.0314 bits (66), Expect = 4.720e-81
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDMRQ+ +
Sbjct:  189 YLYLSGRVDMRQIEK 203          
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STAD_SPIOL (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.366e-80
Identity = 143/187 (76.47%), Postives = 163/187 (87.17%), Query Frame = 1
Query:   88 MALKLSPFTT--QTQKFPSFALPQMGSLRSPKFSMASTLRSNT-KEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 639
            MAL L+P +T  Q ++ PSF+  Q  S RSPKF MASTL S++ KE E+LKKPF PPREVHVQVTHSMP +KIEIFKS+E WAE N+LVHLKPVEKCWQPQD+LPDPAS+ F +QVKE++ERAKE+PDD +VVLVGDMITEEALPTYQTMLNTLDG +DETGAS TSWA+WTRAWTAEENRHGDLLN
Sbjct:    1 MALNLNPVSTPFQCRRLPSFSPRQTPSRRSPKFFMASTLSSSSPKEAESLKKPFSPPREVHVQVTHSMPQEKIEIFKSLEGWAEENLLVHLKPVEKCWQPQDYLPDPASEDFRDQVKEIQERAKEIPDDLYVVLVGDMITEEALPTYQTMLNTLDGAKDETGASPTSWAVWTRAWTAEENRHGDLLN 187          

HSP 2 Score: 28.1054 bits (61), Expect = 1.366e-80
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDMR + +
Sbjct:  189 YLYLSGRVDMRSIEK 203          
BLAST of FC931713 vs. ExPASy Swiss-Prot
Match: STAD_ELAGV (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 3.032e-80
Identity = 139/160 (86.88%), Postives = 150/160 (93.75%), Query Frame = 1
Query:  160 SLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLN 639
            S RSP+ SMAST+  +TK VE  KKPFMPPREVHVQVTHSMPPQKIEIFKS+EDWAENNILVHLKPVEKCWQPQDFLPDP+S+GF E+VKELRER+KE+PD Y+V LVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWA+WTRAWTAEENRHGDLLN
Sbjct:   23 STRSPRISMASTVGPSTK-VEIPKKPFMPPREVHVQVTHSMPPQKIEIFKSLEDWAENNILVHLKPVEKCWQPQDFLPDPSSEGFHEEVKELRERSKEIPDGYYVCLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAVWTRAWTAEENRHGDLLN 181          

HSP 2 Score: 28.8758 bits (63), Expect = 3.032e-80
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  642 YLYLSGRVDMRQLRR 686
            YLYLSGRVDM+Q+ +
Sbjct:  183 YLYLSGRVDMKQIEK 197          
The following BLAST results are available for this feature:
BLAST of FC931713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_RICCO1.465e-9790.22Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOYBN4.669e-9387.50Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CUCSA5.592e-9183.70Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CARTI1.358e-8981.08Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_GOSHI1.777e-8680.43Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_BRANA5.154e-8378.49Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_HELAN3.311e-8278.26Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STADS_BRANA4.720e-8177.01Acyl-[acyl-carrier-protein] desaturase, seed speci... [more]
STAD_SPIOL1.366e-8076.47Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ELAGV3.032e-8086.88Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionC34108B08EF PostHarvP1 Citrus clementina cDNA clone C34108B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931713 ID=FC931713; Name=FC931713; organism=Citrus clementina; type=EST; length=697bp
GGTGGAGGAAAACTGAAGCTGAAAGAGAGAGAGAGAGAGAGAGAAAAGAA
AAAAAGGAGAAAAAAAAAAATTCGAAGAAACAGAAAAATGGCTCTCAAGC
TCAGCCCTTTCACCACTCAAACCCAGAAATTTCCTTCCTTTGCTCTTCCT
CAAATGGGCAGCCTCAGATCTCCAAAGTTCTCCATGGCTTCAACTCTTCG
TTCTAACACCAAGGAGGTTGAGAACCTCAAGAAGCCTTTTATGCCCCCTC
GGGAGGTGCATGTTCAAGTCACCCACTCCATGCCACCTCAAAAGATTGAG
ATCTTCAAATCCATGGAGGACTGGGCTGAGAACAACATTTTGGTTCACCT
GAAGCCAGTTGAGAAGTGTTGGCAACCACAGGATTTTCTGCCAGATCCTG
CCTCTGATGGATTCGATGAACAAGTCAAGGAACTAAGGGAGAGGGCAAAA
GAGCTTCCAGATGATTACTTTGTTGTTTTGGTTGGAGATATGATTACGGA
AGAAGCTCTTCCAACATATCAAACAATGCTTAATACCTTGGACGGGGTTC
GTGATGAAACAGGTGCTAGCCTCACTTCTTGGGCTATTTGGACAAGAGCA
TGGACTGCTGAAGAGAATAGGCATGGAGACCTTCTGAATAGTATCTCTAC
CTGAGTGGACGGGTAGACATGAGACAATTGAGAAGACTATTCAGTAT
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