FC931715

Overview
NameFC931715
Unique NameFC931715
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931715_ssr26 microsatellite FC931715_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15380 contig Ccv1_Contig15380:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: M2K4_ARATH (Mitogen-activated protein kinase kinase 4 OS=Arabidopsis thaliana GN=MKK4 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.481e-42
Identity = 89/172 (51.74%), Postives = 126/172 (73.26%), Query Frame = 2
Query:  191 YSDLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYLHGHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPE 706
            YSDL +   +G G GGTVYKV HR + ++YALKV++G+ + TVRRQ+ RE+EILR  + P +V+C  +F++ +G+I +L+E+MD G+L+        + E + A ++ QIL GL+YLH   I+HRDIKPSNLL+N+    VKIADFGVS+I+ +++D CNS VGT AYMSPE
Sbjct:   76 YSDLVRGNRIGSGAGGTVYKVIHRPSSRLYALKVIYGNHEETVRRQICREIEILRDVNHPNVVKCHEMFDQ-NGEIQVLLEFMDKGSLEGA----HVWKEQQLADLSRQILSGLAYLHSRHIVHRDIKPSNLLINSAK-NVKIADFGVSRILAQTMDPCNSSVGTIAYMSPE 241          
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: M2K5_ARATH (Mitogen-activated protein kinase kinase 5 OS=Arabidopsis thaliana GN=MKK5 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.253e-41
Identity = 88/171 (51.46%), Postives = 124/171 (72.51%), Query Frame = 2
Query:  194 SDLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYLHGHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPE 706
            S+LE++  +G G GGTVYKV H  T + +ALKV++G+ + TVRRQ+ RE+EILR  D P +V+C  +F+  +G+I +L+E+MD G+L+        + E + A ++ QIL GL+YLH   I+HRDIKPSNLL+N+    VKIADFGVS+I+ +++D CNS VGT AYMSPE
Sbjct:   68 SELERVNRIGSGAGGTVYKVIHTPTSRPFALKVIYGNHEDTVRRQICREIEILRSVDHPNVVKCHDMFDH-NGEIQVLLEFMDQGSLEGA----HIWQEQELADLSRQILSGLAYLHRRHIVHRDIKPSNLLINSAK-NVKIADFGVSRILAQTMDPCNSSVGTIAYMSPE 232          
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: MP2K1_XENLA (Dual specificity mitogen-activated protein kinase kinase 1 OS=Xenopus laevis GN=map2k1 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.532e-36
Identity = 80/173 (46.24%), Postives = 115/173 (66.47%), Query Frame = 2
Query:  197 DLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYL-HGHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPEDL 712
            D EK+  LG GNGG V+KV H+ T  I A K++H +  P +R Q+ RE+++L   +SP+IV  +G F    G+I+I ME+MD G+LD +L K G   E     ++  ++KGL+YL   HKI+HRD+KPSN+LVN+   ++K+ DFGVS  +  S+   NS+VGT +YMSPE L
Sbjct:   67 DFEKVSELGAGNGGVVFKVSHKPTSLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICMEHMDGGSLDQVLKKAGKIPEKILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG-EIKLCDFGVSGQLIDSM--ANSFVGTRSYMSPERL 235          
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: DSOR1_DROME (Dual specificity mitogen-activated protein kinase kinase dSOR1 OS=Drosophila melanogaster GN=Dsor1 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.614e-36
Identity = 84/173 (48.55%), Postives = 113/173 (65.32%), Query Frame = 2
Query:  197 DLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYLH-GHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPEDL 712
            DLEKL  LG GNGG V KV+H  T  I A K++H +  P +++Q+ RE+++L   + P IV  +G F    G+I+I MEYMD G+LD +L + G   E     I   +LKGLSYL   H IIHRD+KPSN+LVN++  ++KI DFGVS  +  S+   NS+VGT +YMSPE L
Sbjct:   86 DLEKLGELGSGNGGVVMKVRHTHTHLIMARKLIHLEVKPAIKKQILRELKVLHECNFPHIVGFYGAFYS-DGEISICMEYMDGGSLDLILKRAGRIPESILGRITLAVLKGLSYLRDNHAIIHRDVKPSNILVNSSG-EIKICDFGVSGQLIDSM--ANSFVGTRSYMSPERL 254          
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: MP2K1_CRIGR (Dual specificity mitogen-activated protein kinase kinase 1 OS=Cricetulus griseus GN=MAP2K1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.025e-36
Identity = 78/173 (45.09%), Postives = 116/173 (67.05%), Query Frame = 2
Query:  197 DLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYL-HGHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPEDL 712
            D EK+  LG GNGG V+KV H+ +  + A K++H +  P +R Q+ RE+++L   +SP+IV  +G+F    G+I+I ME+MD G+LD +L K G   E     ++  ++KGL+YL   HKI+HRD+KPSN+LVN+   ++K+ DFGVS  +  S+   NS+VGT +YMSPE L
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGVFYS-DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG-EIKLCDFGVSGQLIDSM--ANSFVGTRSYMSPERL 235          
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: MP2K1_SERCA (Dual specificity mitogen-activated protein kinase kinase 1 (Fragment) OS=Serinus canaria GN=MAP2K1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 79/173 (45.66%), Postives = 115/173 (66.47%), Query Frame = 2
Query:  197 DLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYL-HGHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPEDL 712
            D EK+  LG GNGG V+KV H+ +  I A K++H +  P +R Q+ RE+++L   +SP+IV  +G F    G+I+I ME+MD G+LD +L K G   E     ++  ++KGL+YL   HKI+HRD+KPSN+LVN+   ++K+ DFGVS  +  S+   NS+VGT +YMSPE L
Sbjct:   60 DFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG-EIKLCDFGVSGQLIDSM--ANSFVGTRSYMSPERL 228          
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: MP2K1_RAT (Dual specificity mitogen-activated protein kinase kinase 1 OS=Rattus norvegicus GN=Map2k1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 78/173 (45.09%), Postives = 115/173 (66.47%), Query Frame = 2
Query:  197 DLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYL-HGHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPEDL 712
            D EK+  LG GNGG V+KV H+ +  + A K++H +  P +R Q+ RE+++L   +SP+IV  +G F    G+I+I ME+MD G+LD +L K G   E     ++  ++KGL+YL   HKI+HRD+KPSN+LVN+   ++K+ DFGVS  +  S+   NS+VGT +YMSPE L
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG-EIKLCDFGVSGQLIDSM--ANSFVGTRSYMSPERL 235          
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: MP2K1_RABIT (Dual specificity mitogen-activated protein kinase kinase 1 OS=Oryctolagus cuniculus GN=MAP2K1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 78/173 (45.09%), Postives = 115/173 (66.47%), Query Frame = 2
Query:  197 DLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYL-HGHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPEDL 712
            D EK+  LG GNGG V+KV H+ +  + A K++H +  P +R Q+ RE+++L   +SP+IV  +G F    G+I+I ME+MD G+LD +L K G   E     ++  ++KGL+YL   HKI+HRD+KPSN+LVN+   ++K+ DFGVS  +  S+   NS+VGT +YMSPE L
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG-EIKLCDFGVSGQLIDSM--ANSFVGTRSYMSPERL 235          
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: MP2K1_MOUSE (Dual specificity mitogen-activated protein kinase kinase 1 OS=Mus musculus GN=Map2k1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 78/173 (45.09%), Postives = 115/173 (66.47%), Query Frame = 2
Query:  197 DLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYL-HGHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPEDL 712
            D EK+  LG GNGG V+KV H+ +  + A K++H +  P +R Q+ RE+++L   +SP+IV  +G F    G+I+I ME+MD G+LD +L K G   E     ++  ++KGL+YL   HKI+HRD+KPSN+LVN+   ++K+ DFGVS  +  S+   NS+VGT +YMSPE L
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG-EIKLCDFGVSGQLIDSM--ANSFVGTRSYMSPERL 235          
BLAST of FC931715 vs. ExPASy Swiss-Prot
Match: MP2K1_HUMAN (Dual specificity mitogen-activated protein kinase kinase 1 OS=Homo sapiens GN=MAP2K1 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.753e-35
Identity = 78/173 (45.09%), Postives = 115/173 (66.47%), Query Frame = 2
Query:  197 DLEKLQVLGHGNGGTVYKVQHRCTLKIYALKVVHGDADPTVRRQVFREMEILRRTDSPFIVQCFGIFEKPSGDIAILMEYMDSGTLDTLLNKNGTFSEPKPAHIASQILKGLSYL-HGHKIIHRDIKPSNLLVNNNNMQVKIADFGVSKIMCRSLDACNSYVGTCAYMSPEDL 712
            D EK+  LG GNGG V+KV H+ +  + A K++H +  P +R Q+ RE+++L   +SP+IV  +G F    G+I+I ME+MD G+LD +L K G   E     ++  ++KGL+YL   HKI+HRD+KPSN+LVN+   ++K+ DFGVS  +  S+   NS+VGT +YMSPE L
Sbjct:   67 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG-EIKLCDFGVSGQLIDSM--ANSFVGTRSYMSPERL 235          
The following BLAST results are available for this feature:
BLAST of FC931715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
M2K4_ARATH1.481e-4251.74Mitogen-activated protein kinase kinase 4 OS=Arabi... [more]
M2K5_ARATH1.253e-4151.46Mitogen-activated protein kinase kinase 5 OS=Arabi... [more]
MP2K1_XENLA3.532e-3646.24Dual specificity mitogen-activated protein kinase ... [more]
DSOR1_DROME4.614e-3648.55Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_CRIGR6.025e-3645.09Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_SERCA1.342e-3545.66Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_RAT1.753e-3545.09Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_RABIT1.753e-3545.09Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_MOUSE1.753e-3545.09Dual specificity mitogen-activated protein kinase ... [more]
MP2K1_HUMAN1.753e-3545.09Dual specificity mitogen-activated protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC34108B10EF PostHarvP1 Citrus clementina cDNA clone C34108B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931715 ID=FC931715; Name=FC931715; organism=Citrus clementina; type=EST; length=720bp
GATTTCTTCAAATCAAAACAAAAAGATAATAATAATAACAATAATGGCCG
TCGTAAAGCAACGTCGCCAACTCAATCTTCGTCTCCCTATGCCTGAACTT
TCGGAGCGGTGCCTGCGTTTTCCTTTGGCCCTCCCTCCCACTGCCCCCAA
CACTAATAACAACACCACCGCCACCACCGCCGCCATCGCCTACTCTGATC
TTGAGAAACTTCAAGTCCTTGGCCACGGAAACGGTGGAACAGTCTACAAA
GTCCAACACAGATGCACCCTCAAAATCTACGCCCTCAAAGTTGTCCATGG
CGACGCTGACCCCACCGTGCGCCGCCAAGTCTTCCGTGAAATGGAAATCC
TCCGCCGCACTGACTCTCCTTTCATTGTTCAGTGCTTTGGTATATTCGAA
AAGCCTTCTGGTGACATCGCTATTTTGATGGAGTACATGGATTCAGGCAC
CCTCGATACTTTGTTGAACAAAAACGGCACCTTTTCGGAGCCTAAGCCTG
CTCACATAGCCTCTCAAATTCTCAAAGGTTTGAGTTATTTGCATGGCCAT
AAAATCATTCATCGAGATATTAAGCCATCCAATTTACTGGTTAATAACAA
CAACATGCAAGTGAAAATAGCCGATTTTGGTGTTAGTAAAATCATGTGCC
GTTCTTTGGATGCTTGTAATTCTTATGTGGGTACTTGTGCTTATATGAGT
CCTGAAGATTTGACCCGATG
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