FC931717

Overview
NameFC931717
Unique NameFC931717
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15330 contig Ccv1_Contig15330:114..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA1_RAT (Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.746e-19
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  245 PRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVLMYLSHVEKGGETVFP 637
            PR   +   +SD E + + DLAK +L ++ V D E+GK   ++ R S   +LS  +D +V+ I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D   +   G+RIAT L Y+S V  GG TVFP
Sbjct:  335 PRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP 469          
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA1_CAEEL (Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 54/150 (36.00%), Postives = 85/150 (56.67%), Query Frame = 2
Query:  209 FDPSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR---DKMNQQLG-GHRIATVLMYLSHVEKGGETVFPNSE 646
            + P +V    +NP A ++K  +SD+E   + +LAK KL ++ V D+ +GK + +  R S   +L + + ++V ++  RI   T L  E  E +QI +Y  G  Y+PHFD  +    K  + LG G+RIATVL Y+S    GG TVF  ++
Sbjct:  316 YAPIKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTGNRIATVLFYMSQPSHGGGTVFTEAK 465          
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA2_CHICK (Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 51/135 (37.78%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  242 NPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQL--GGHRIATVLMYLSHVEKGGETVFPN 640
            +P    Y   +SDEE + +  LAK KL ++ V D ++G    +  R S   +L +  D +VA +  R+   T L  +  E +Q+ +Y  G +YEPHFDF R   +  L   G+R+AT L Y+S VE GG TVFP+
Sbjct:  336 SPHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNYMSDVEAGGATVFPD 470          
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA1_CHICK (Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.373e-18
Identity = 53/135 (39.26%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  245 PRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVLMYLSHVEKGGETVFP 637
            PR   +   +SDEE + + +LAK +L ++ V D E+GK   +  R S   +LS  +  +V+ I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D   +   G+RIAT L Y+S V  GG TVFP
Sbjct:  317 PRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP 451          
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA2_MOUSE (Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.711e-18
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  242 NPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVLMYLSHVEKGGETVFPN 640
            +P    Y   +SDEE + + ++AK KL ++ V D ++G    +  R S   +L +  D +VA +  R+   T L  +  E +Q+ +Y  G +YEPHFDF R    D   +   G+R+AT L Y+S VE GG TVFP+
Sbjct:  337 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYMSDVEAGGATVFPD 473          
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA2_HUMAN (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  242 NPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN---QQLG-GHRIATVLMYLSHVEKGGETVFPN 640
            +P    Y   +SDEE + + ++AK KL ++ V D ++G    +  R S   +L +  D +VA +  R+   T L  +  E +Q+ +Y  G +YEPHFDF R+      + LG G+R+AT L Y+S VE GG TVFP+
Sbjct:  335 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFLNYMSDVEAGGATVFPD 471          
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA2_CAEEL (Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  215 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQL----GGHRIATVLMYLSHVEKGGETVF 634
            P +V  L ++P A ++K  + D E + + +LA  KL+++ V ++++G+   +  R S   +L    D ++  +  RI  +T L     E +Q+ +Y  G  Y+PHFDF R +          G+RIATVL Y+S  E+GG TVF
Sbjct:  315 PIKVEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGNRIATVLFYMSQPERGGATVF 458          
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA3_RAT (Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.134e-16
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  215 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYEHGQKYEPHFDFF---RDKMNQQLGGHRIATVLMYLSHVEKGGETVF 634
            P+R   +   P   +Y  F+SDEE   + +LA+  L++S+VA  E  K +  E R S   +L    D ++ +++ RIAA T L   P   E +Q+++Y  G  YEPHFD        + +   G+R AT+++YLS VE GG T F
Sbjct:  336 PARKEVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKDTVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKSGNRAATLMIYLSSVEAGGATAF 478          
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA1_MOUSE (Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  245 PRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR----DKMNQQLGGHRIATVLMYLSHVEKGGETVFP 637
            PR   +   +SD E + + DLAK +L ++ +++  +G       R S   +LS  +D +V+ I  RI   T L     E +Q+ +Y  G +YEPHFDF R    D   +   G+RIAT L Y+S V  GG TVFP
Sbjct:  335 PRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP 469          
BLAST of FC931717 vs. ExPASy Swiss-Prot
Match: P4HA3_MOUSE (Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.981e-16
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  215 PSRVTQLSWNPRAFIYKGFLSDEECDHLIDLAKDKLEKSMVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYEHGQKYEPHFDFF---RDKMNQQLGGHRIATVLMYLSHVEKGGETVF 634
            P+R   +   P   +Y  F+SDEE   + +LA+  L++S+VA  E  K +  E R S   +L    D ++ +++ RIAA T L   P   E +Q+++Y  G  YEPHFD        + +   G+R+AT ++YLS VE GG T F
Sbjct:  334 PARKEVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKDTVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSGNRVATFMIYLSSVEAGGATAF 476          
The following BLAST results are available for this feature:
BLAST of FC931717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
P4HA1_RAT6.746e-1940.00Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus nor... [more]
P4HA1_CAEEL1.151e-1836.00Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabd... [more]
P4HA2_CHICK2.564e-1837.78Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gal... [more]
P4HA1_CHICK4.373e-1839.26Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gal... [more]
P4HA2_MOUSE5.711e-1836.50Prolyl 4-hydroxylase subunit alpha-2 OS=Mus muscul... [more]
P4HA2_HUMAN7.459e-1837.23Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
P4HA2_CAEEL2.399e-1633.33Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabd... [more]
P4HA3_RAT3.134e-1635.86Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus nor... [more]
P4HA1_MOUSE4.093e-1637.04Prolyl 4-hydroxylase subunit alpha-1 OS=Mus muscul... [more]
P4HA3_MOUSE6.981e-1635.86Prolyl 4-hydroxylase subunit alpha-3 OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC34108B12EF PostHarvP1 Citrus clementina cDNA clone C34108B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931717 ID=FC931717; Name=FC931717; organism=Citrus clementina; type=EST; length=723bp
GACTGCTGAAACAAACCCCCATTTCATCATTTTTGTTTTCTTCGAAATCA
AAAACAGATTTTTCCAAATGGGTGCTTGTTATTTTCTTGCACTTTCTCTT
TGTTTCCTCCTTATTTTCCCTGATCCATCTGGCTCTGTCAAGGTTCCCGG
TTGGCTCAGCGACAAAGAAAAAAAGACATCGGTGCTGAGGTTGAAGACGA
GTACTACGTTTGATCCTTCACGTGTAACTCAGCTTTCATGGAATCCCAGG
GCTTTTATATATAAAGGGTTTTTGTCAGATGAGGAGTGTGATCATCTTAT
TGATCTGGCAAAGGACAAGCTTGAGAAGTCAATGGTTGCTGATAATGAAT
CTGGGAAGAGTATAGCGAGTGAAGTTCGAACGAGTTCTGGCATGTTTCTT
AGCAAAGCTCAGGATGAGATAGTAGCCAGTATTGAGGCCAGGATCGCTGC
ATGGACTTTTCTTCCACCAGAAAATGGGGAAGCCATGCAAATACTGCACT
ATGAGCATGGTCAAAAGTATGAGCCACATTTTGATTTTTTTCGCGACAAA
ATGAATCAACAGCTAGGTGGTCATCGAATTGCTACAGTGTTAATGTATTT
GTCTCATGTTGAGAAGGGTGGTGAAACTGTCTTTCCCAACTCAGAAGTTT
CTCAGTCAAGGGATGGTAACTGGTCTGAATGTGCTAGAAGGGGCTATGCA
GTGAAACCCATGAAGGGTGATGC
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