FC931735

Overview
NameFC931735
Unique NameFC931735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_DICDI (T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.050e-49
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPK 676
            FVTNDAATI+ EL+V HPAAK+LV+A + Q++E+GDG N  ++  GE LQ A  L+ MGLHPSEII+G+ KA  K             +  D+ + +EV   +K+A+ASKQ+G EE L  +I +AC+QV PK
Sbjct:   57 FVTNDAATIIRELDVIHPAAKMLVMAAQMQEQEMGDGTNYVVTLTGEFLQKAATLLEMGLHPSEIITGFEKAGAKLQEIIESMIVYNLK--DITDKKEVTKCLKSAIASKQYGYEEFLSEIITNACLQVLPK 186          

HSP 2 Score: 89.3521 bits (220), Expect = 4.050e-49
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1
Query:  118 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            G+  MLK+G KH +G DEA+L+NIDA KQLS ITRTSLGPNGMNKM+INHL+KLF
Sbjct:    3 GLTDMLKDGAKHFAGKDEAILRNIDATKQLSEITRTSLGPNGMNKMIINHLEKLF 57          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_CHICK (T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.154e-47
Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCP 673
            FVTNDAATI+ ELEVQHPAAK+LV+A   Q++E+GDG N  + FAG +L+ AE+L+RMGL  SE+I GY KA  K            ++N+  R+ +EV   +  +V SKQ+G E  L  LIA AC+ + P
Sbjct:   64 FVTNDAATILRELEVQHPAAKMLVMASHMQEQEVGDGTNFVLVFAGVLLELAEDLLRMGLSVSEVIEGYEKACKKALEILPDLVCCSAKNL--RDVDEVASLLHTSVMSKQYGNESFLSKLIAQACVSILP 192          

HSP 2 Score: 84.3445 bits (207), Expect = 2.154e-47
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  118 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            G   MLKEG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLF
Sbjct:   10 GFAQMLKEGAKHYSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLF 64          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_MACFA (T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.046e-46
Identity = 61/131 (46.56%), Postives = 86/131 (65.65%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCP 673
            FVTNDAATI+ ELEVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+I GY  A  K            ++N+  R+ +EV   ++ ++ SKQ+G E  L  LIA AC+ + P
Sbjct:   64 FVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNL--RDVDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFP 192          

HSP 2 Score: 84.7297 bits (208), Expect = 3.046e-46
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  118 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            G   MLKEG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLF
Sbjct:   10 GFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLF 64          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_PONAB (T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.970e-46
Identity = 61/131 (46.56%), Postives = 86/131 (65.65%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCP 673
            FVTNDAATI+ ELEVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+I GY  A  K            ++N+  R+ +EV   ++ ++ SKQ+G E  L  LIA AC+ + P
Sbjct:   64 FVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNL--RDIDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFP 192          

HSP 2 Score: 84.7297 bits (208), Expect = 3.970e-46
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  118 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            G   MLKEG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLF
Sbjct:   10 GFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLF 64          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4)

HSP 1 Score: 121.324 bits (303), Expect = 3.970e-46
Identity = 61/131 (46.56%), Postives = 86/131 (65.65%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCP 673
            FVTNDAATI+ ELEVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+I GY  A  K            ++N+  R+ +EV   ++ ++ SKQ+G E  L  LIA AC+ + P
Sbjct:   64 FVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVCCSAKNL--RDIDEVSSLLRTSIMSKQYGNEVFLAKLIAQACVSIFP 192          

HSP 2 Score: 84.7297 bits (208), Expect = 3.970e-46
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  118 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            G   MLKEG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLF
Sbjct:   10 GFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLF 64          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_BOVIN (T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=2 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.970e-46
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCP 673
            FVTNDAATI+ ELEVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+I GY  A  K            ++N+  R+ +EV   +  +V SKQ+G E  L  LIA AC+ + P
Sbjct:   64 FVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNL--RDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFP 192          

HSP 2 Score: 84.7297 bits (208), Expect = 3.970e-46
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  118 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            G   MLKEG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLF
Sbjct:   10 GFAQMLKEGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLF 64          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_MOUSE (T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.492e-45
Identity = 62/131 (47.33%), Postives = 87/131 (66.41%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCP 673
            FVTNDAATI+ ELEVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+ISGY  A  K            ++N+  R+ +EV   ++ ++ SKQ+G E  L  LIA AC+ + P
Sbjct:   64 FVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIACKKAHEILPELVCCSAKNL--RDVDEVSSLLRTSIMSKQYGSETFLAKLIAQACVSIFP 192          

HSP 2 Score: 80.4925 bits (197), Expect = 1.492e-45
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  118 GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            G   MLK+G KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVIN L+KLF
Sbjct:   10 GFAQMLKDGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINRLEKLF 64          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_CAEEL (T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=Y55F3AR.3 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.898e-40
Identity = 54/131 (41.22%), Postives = 83/131 (63.36%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCP 673
            FVTNDAATI+ ELE+QHPAA+++++A + Q+++IGD  N  +  A  +L+ A  LI MG+ P E+ +GY +A  K             E  D++N EEV   +++A+ SKQ+  E+I+  L+A AC+  CP
Sbjct:   63 FVTNDAATILKELEIQHPAARIIIMATEMQEKQIGDNTNTVVILAAALLEHAANLIHMGMTPQEVAAGYEQAAEKALEILPTLVV--KEATDMKNIEEVRQYIRSAITSKQYDNEDIIADLVAKACVTTCP 191          

HSP 2 Score: 72.4034 bits (176), Expect = 2.898e-40
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   94 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            M   +   G    +KEG +H  G DEAV +NI+AC +L++  R++ GPNGMNKMVINH++KLF
Sbjct:    1 MAMKIPKSGYNRFMKEGAQHFKGTDEAVQRNIEACTELASQIRSAYGPNGMNKMVINHIEKLF 63          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_SCHPO (Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe GN=cct8 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 1.631e-38
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKTPA 685
            F+TNDAATI+ ELEV HPAAKL+V A + Q+ E+GD AN  + F GE+L  AE +IRMGL P EI  GY  A++ T            E   V + +E+I  ++  ++SKQ+G E+ L  L+A A + V PK P+
Sbjct:   63 FLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIET--VESEKELIKAIRTCISSKQYGNEDFLSDLVAKAILTVLPKDPS 195          

HSP 2 Score: 65.4698 bits (158), Expect = 1.631e-38
Identity = 27/51 (52.94%), Postives = 42/51 (82.35%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            + +EG++ M G+++AV++N +A ++LS ITRTSLGPNG NK+V+NHL + F
Sbjct:   13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTF 63          

HSP 3 Score: 21.557 bits (44), Expect = 1.631e-38
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  667 LPQDPSHFNV 696
            LP+DPS FNV
Sbjct:  190 LPKDPSKFNV 199          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 7.166e-28
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  281 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGY---TKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADA 655
            F+TNDAAT++NELE+ HP  K+L+ A K Q+ E+GD  NL I  AGE L  AE+L+ +GL+ SEII G+    K + KT            E        +++  +K  +A+KQ+G E+ +  L+ DA
Sbjct:   63 FITNDAATMLNELEIVHPVVKILIQASKQQEFEMGDNTNLVIILAGEFLNVAEKLLTLGLNVSEIIQGFNLANKFVMKTLDELVVEKVESFET-------DLLKAVKPVIAAKQYGVEDTIAKLVVDA 183          

HSP 2 Score: 51.6026 bits (122), Expect = 7.166e-28
Identity = 19/51 (37.25%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLF 282
            + K+G+   S  D A+++N++A +++++I  TS+GP+G NK+++N L K F
Sbjct:   13 LFKQGYSSFSNADGAIIRNVEAVREIASILLTSMGPSGRNKIIVNKLGKKF 63          
The following BLAST results are available for this feature:
BLAST of FC931735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
TCPQ_DICDI4.050e-4949.24T-complex protein 1 subunit theta OS=Dictyostelium... [more]
TCPQ_CHICK2.154e-4748.85T-complex protein 1 subunit theta OS=Gallus gallus... [more]
TCPQ_MACFA3.046e-4646.56T-complex protein 1 subunit theta OS=Macaca fascic... [more]
TCPQ_PONAB3.970e-4646.56T-complex protein 1 subunit theta OS=Pongo abelii ... [more]
TCPQ_HUMAN3.970e-4646.56T-complex protein 1 subunit theta OS=Homo sapiens ... [more]
TCPQ_BOVIN3.970e-4647.33T-complex protein 1 subunit theta OS=Bos taurus GN... [more]
TCPQ_MOUSE1.492e-4547.33T-complex protein 1 subunit theta OS=Mus musculus ... [more]
TCPQ_CAEEL2.898e-4041.22T-complex protein 1 subunit theta OS=Caenorhabditi... [more]
TCPQ_SCHPO1.631e-3845.19Probable T-complex protein 1 subunit theta OS=Schi... [more]
TCPQ_CANAL7.166e-2839.84T-complex protein 1 subunit theta OS=Candida albic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108D07EF PostHarvP1 Citrus clementina cDNA clone C34108D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931735 ID=FC931735; Name=FC931735; organism=Citrus clementina; type=EST; length=696bp
AGGGATTTCGGGTTTATTTCTCCTCTCTCTGAATCACAACCTTGTAAAAG
AGAAAAGAAAAAAGAAAAAATCAAGTGACGAAGAGAAAAAAAAATGGGAT
TTTCAATGCAACCGTATGGGATACAGTCAATGCTCAAAGAAGGGCACAAG
CACATGTCAGGTCTCGACGAAGCTGTGCTAAAAAACATCGATGCTTGCAA
ACAGCTTTCTACTATCACTCGCACTTCTCTTGGACCCAATGGTATGAATA
AGATGGTTATCAATCATTTAGACAAACTTTTTTGTCACAAATGATGCTGC
GACTATTGTTAATGAACTTGAGGTTCAGCATCCTGCTGCCAAGCTTTTGG
TCTTAGCTGGAAAGGCTCAACAGGAAGAAATTGGTGATGGGGCCAATTTG
ACAATCTCGTTTGCTGGGGAAATTCTACAGGGTGCAGAGGAGCTTATAAG
GATGGGCCTACACCCTAGTGAGATCATCAGTGGATACACTAAGGCGATCA
ATAAGACCATTGAAATCTTAGAAGAACTGGTGGAGGAAGGTTCTGAAAAT
ATGGATGTTAGAAATACGGAGGAAGTTATTTATCGAATGAAGGCTGCTGT
TGCTAGCAAGCAATTTGGCCAAGAGGAGATTTTGTGTCCGCTTATTGCTG
ATGCATGCATCCAAGTTTGCCCCAAGACCCCAGCCACTTTAACGTT
back to top