FC931777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_ARATH (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2) HSP 1 Score: 268.47 bits (685), Expect = 2.538e-71 Identity = 142/229 (62.01%), Postives = 167/229 (72.93%), Query Frame = 1 Query: 31 LRNPNFDFSVSFTIMSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDI-------YNSNCNDKDIRDITNKFLKGTPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696 L +P+ S FT MSSLEEPL DKLPSMST+DRIQRFSS ACRP D +GMG WIEG C+TSNS +D + +E+FPWRRHTR +S G+ R GR + G+ + Y++ N+ I+NK KG P+FVKIVEVGPRDGLQNEKN VPT VKVELI+RLVSSGLPVVEATSFVSPKWVPQLADA+DVM+AV L+GARLPVLTPNL+G + Sbjct: 23 LHHPSIPVSHFFT-MSSLEEPLSFDKLPSMSTMDRIQRFSSGACRPRDD-VGMGHRWIEGRDCTTSNSCIDDDKSFAKESFPWRRHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTSHISNKISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGFQ 249
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_BOVIN (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26 Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 1 Query: 406 IRDITNKFLKGTPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696 +R ++ + P+ VKIVEVGPRDGLQNEKN VPT VK++LI L +GLPVVEATSFVSPKWVPQ+AD +V++ ++ G PVLTPN +G + Sbjct: 18 LRAVSTSSVGTFPKQVKIVEVGPRDGLQNEKNIVPTPVKIKLIDMLSEAGLPVVEATSFVSPKWVPQMADHAEVLKGIQKFPGVNYPVLTPNFKGFQ 114
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGC2_MOUSE (Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Mus musculus GN=Hmgcll1 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.234e-25 Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1 Query: 430 LKGTPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696 L G P +VKIVEVGPRDGLQNEK VPT +K+ELI +L +GL V+E TSFVS +WVPQ+AD +VM +R G R PVLTPNL+G + Sbjct: 41 LPGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWVPQMADHAEVMRGIRQYPGVRYPVLTPNLQGFQ 129
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGC2_HUMAN (Probable 3-hydroxymethyl-3-methylglutaryl-CoA lyase 2 OS=Homo sapiens GN=HMGCLL1 PE=2 SV=3) HSP 1 Score: 116.316 bits (290), Expect = 1.612e-25 Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 1 Query: 430 LKGTPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRG 690 L G P FVKIVEVGPRDGLQNEK VPT +K+E I RL +GL V+E TSFVS +WVPQ+AD +VM+ + G R PVLTPNL+G Sbjct: 71 LSGLPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQMADHTEVMKGIHQYPGVRYPVLTPNLQG 157
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_RAT (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25 Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 1 Query: 442 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696 P+ VKIVEVGPRDGLQNEK+ VPT VK++LI L +GLPV+EATSFVSPKWVPQ+AD DV++ ++ G PVLTPN++G + Sbjct: 30 PKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFVSPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFE 114
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_CHICK (Hydroxymethylglutaryl-CoA lyase OS=Gallus gallus GN=HMGCL PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25 Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1 Query: 442 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696 P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI L +GLPV+EATSFVSP+WVPQ+AD +VM+ + L G PVLTPNL+G + Sbjct: 3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHAEVMQGINKLPGVSYPVLTPNLKGFQ 87
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_MOUSE (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25 Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1 Query: 406 IRDITNKFLKGTPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696 +R ++ + P+ VKIVEVGPRDGLQNEK+ VPT VK+ LI L +GLPV+EATSFVSP WVPQ+AD DV++ ++ G PVLTPN++G + Sbjct: 18 LRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSFVSPNWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFE 114
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_MACFA (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23 Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 1 Query: 406 IRDITNKFLKGTPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696 +R ++ + P+ VKIVEVGPRDGLQNEKN V T VK++LI L +GL V+EATSFVSPKWVPQ+AD +V++ ++ G PVL PNL+G + Sbjct: 18 LRAVSTSSMDTLPKQVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIEATSFVSPKWVPQMADHAEVLKGIQKFPGITYPVLIPNLKGFE 114
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_PONAB (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23 Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1 Query: 406 IRDITNKFLKGTPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696 +R ++ + P+ VKIVEVGPRDGLQNEKN V T VK++LI L +GL V+E TSFVSPKWVPQ+ D +V++ ++ G PVLTPNL+G + Sbjct: 18 LRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFE 114
BLAST of FC931777 vs. ExPASy Swiss-Prot
Match: HMGCL_HUMAN (Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23 Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1 Query: 406 IRDITNKFLKGTPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLRGLK 696 +R ++ + P+ VKIVEVGPRDGLQNEKN V T VK++LI L +GL V+E TSFVSPKWVPQ+ D +V++ ++ G PVLTPNL+G + Sbjct: 18 LRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFE 114 The following BLAST results are available for this feature:
BLAST of FC931777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931777 ID=FC931777; Name=FC931777; organism=Citrus clementina; type=EST; length=705bpback to top |