FC931780

Overview
NameFC931780
Unique NameFC931780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.176e-54
Identity = 115/207 (55.56%), Postives = 143/207 (69.08%), Query Frame = 3
Query:   93 TPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK----LPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEP-PSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQTLNYALFNXNA 698
            TPS    IGVNYGA A+NLP P  VA FL T+TTIDRVKLFDANP F+ AFA T I + V++ N  +PALA     L AA+SW+  N+ P+ P T    ++ GNEIL ++D  LI SLLPAMR L  AL A  L+ V+V+TPH LGIL+ S+  PS   FR GY+  +F  +L+FHR T SPFMV PYPYF ++P+TLNYALF  N+
Sbjct:   21 TPSL--HIGVNYGANADNLPSPTSVATFLATKTTIDRVKLFDANPTFISAFAGTPISLAVSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMRRLAQALKAEGLTGVRVTTPHYLGILAPSDGIPSNASFRAGYNTKLFPAMLQFHRDTGSPFMVNPYPYFSYRPETLNYALFRPNS 225          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 84/201 (41.79%), Postives = 131/201 (65.17%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLP-AAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGF----KPQTLNYALFNXNA 698
            IGVNYG +A+NLPPP +    L++ T+I +V+L+ A+P  ++A A T + + +   NGD+P+LA  P AA  W+ +N+LP +P +    I +GNEIL ++D  L+  LLPAM+ ++ AL+A +L   ++VST +S+ +L +S+PPS+G F  GY   +   IL+F   T SPF + PYP+F +    +P+TL + LF  NA
Sbjct:   26 IGVNYGQVADNLPPPSETVKLLQS-TSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSFAAGYQTGL-KGILQFLSDTGSPFAINPYPFFAYQSDPRPETLAFCLFEPNA 224          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.673e-36
Identity = 89/208 (42.79%), Postives = 122/208 (58.65%), Query Frame = 3
Query:   90 ITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKG-YDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALFNXN 695
            I P+   SIGVNYG I +NLP P  V   +K+     +VKL+DANP+ L+AF++T I   + +GN  +  +     A +W+  N+ P  P T    I +GNEILA +D  L  +LLPAM+ + SAL  A LS  + V+T HSL IL +S PPS G F+    D L    ILEFHR+T SPF++  YP+F +K       L++ LF  N
Sbjct:   21 ILPTTTTSIGVNYGQIGDNLPSPTDVIPLIKS-IGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSKMKDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLDSL--TPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVLFQPN 225          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.040e-35
Identity = 84/200 (42.00%), Postives = 125/200 (62.50%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALFNXN 695
            +G+NYG IANNLP P +VA  L++   I RVKL+DA+P  L +F+++ +   + +GN  +  ++  P  AQ W+   + PH  +T    IV+GNEI  T+D VLI SLLPAM+++ +AL    L   V V++ HSL ILSTS PPS+G F++ + + +   +L+FH Q +SPF++  YP+F +K       L Y LF  N
Sbjct:   29 VGINYGQIANNLPSPARVAVLLRS-LNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEFIQYL-QPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVLFQPN 226          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 85/209 (40.67%), Postives = 121/209 (57.89%), Query Frame = 3
Query:   96 PSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSAL-DAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRL-IFARILEFHRQTKSPFMVYPYPYFGF----KPQTLNYALFNXNAAF 704
            P    SIG+NYG +ANNLPPP+ V   LK+     +VKL+DA+P+ LRAFA +   +TV +GN  +  ++    AQ WV  N+  + P T    IV+GNE+L ++   L A+L PAM+++  AL D      + V+T HSL IL  S PPS   FR+  D L     IL+FH +T SP ++  YP+F +    K  +L++ LF  N  F
Sbjct:   21 PLIVSSIGINYGQVANNLPPPKNVIPLLKS-VGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQMSDPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRR--DLLGSLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQPNQGF 226          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.793e-32
Identity = 78/205 (38.05%), Postives = 120/205 (58.54%), Query Frame = 3
Query:  105 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQTLN----YALFNXNAAF 704
            A  IG+NYG   NNLP P Q  NF+K+      VKL+DA+PE L   + TN+ VT+TV N  I AL+     A  WV  NILP++PQT  R++++GNEIL+ +   +  +L+PAMR + ++L    + +++V TP ++  L +S PPS G FR+     +   +L+F   T S F +  +PYF +    +N    +ALF  ++ +
Sbjct:   39 ASKIGINYGRRGNNLPSPYQSINFIKS-IKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGIHNIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQGHSTY 242          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 76/204 (37.25%), Postives = 120/204 (58.82%), Query Frame = 3
Query:  105 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALFNXNA 698
            A  IG+ YG  A+NLP P +V+  ++    I  V+++DAN + L+AFA+T I + + V N D+ A A+  +   +W++NNILP++P T    I +G E+    D      +LPAMR + +AL  + L   +++S+ HSL ILS S PPS+  F K +   +   +LEF  + +SPFM+  YPY+ ++  T    L YALF  ++
Sbjct:   24 ASKIGICYGRNADNLPSPNRVSELIQ-HLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNA-TGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASFSKKHSAFL-KPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFESSS 224          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 78/202 (38.61%), Postives = 115/202 (56.93%), Query Frame = 3
Query:   99 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLP-AAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALF 686
            S A  IGVN G    N+PPP  +   LK+Q  I  V+L+DAN   L+AFA+T+I V V V N +I  + + P AA +WV  N+  + P T    I +G+E+L T   V    L  A+  +  AL A+NL+  V+VS+P S+ I+    PPST  F   ++  ++ ++L+F + T S FM+  YPY+G+        L+YALF
Sbjct:   21 SNAAFIGVNIGTDLTNMPPPSDIVTLLKSQQ-ITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEVLTTIPHV-APILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVY-QLLQFLKNTGSFFMLNAYPYYGYTTANGIFPLDYALF 219          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 77/201 (38.31%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  105 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGF----KPQTLNYALF 686
            A S+GV YG + NNLPP  QV    K++  I R++L+D N   L+A   +NI V + V N D+  +A  P+ A +WV  N+    P   FRYI +GNE+   T    L   LLPAMR +++A+ +A L ++++VS+   + ++  S PPS G FR    R     I+ F R+  SP +V  YPYF +    +  +L YALF
Sbjct:   30 AQSVGVCYGMLGNNLPPASQVVQLYKSK-NIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRNDV-RSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALF 228          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 77/197 (39.09%), Postives = 116/197 (58.88%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALF 686
            IGVN G    N+P P QV   LK+Q  I+RV+L+DA+   L AFAHT + V ++V N  +  +++  A A +WV  N+  ++P T    I +G+E+L TS     + L+ A++ +++AL  ANL   ++VSTPHS  I+  S PPS   F K +D +I   +L+F + T SP ++  YPYF +        L+YALF
Sbjct:   23 IGVNIGTEVTNMPSPTQVVALLKSQN-INRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVL-TSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTWDPVI-VPLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYALF 216          
The following BLAST results are available for this feature:
BLAST of FC931780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E13B_WHEAT2.176e-5455.56Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E137_ARATH1.159e-3941.79Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E1311_ARATH2.673e-3642.79Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1314_ARATH5.040e-3542.00Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E1310_ARATH4.267e-3440.67Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
EA6_ARATH1.793e-3238.05Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E1312_ARATH4.133e-2937.25Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E134_ARATH2.268e-2738.61Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
GUB_NICPL3.868e-2738.31Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E133_ARATH5.052e-2739.09Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC34201B04EF PostHarveN Citrus clementina cDNA clone C34201B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931780 ID=FC931780; Name=FC931780; organism=Citrus clementina; type=EST; length=712bp
GCTCCTTCGCTTCTCAAATCATGGCTGTTACTGTTACTAAACTCTCTCAA
TTCCTCCTCTTCCTCTTCCTCTCCCTGTCTTGCAACGCCATCACCCCCTC
CGCCGCTGACTCCATCGGAGTCAACTACGGCGCCATCGCCAACAACCTCC
CGCCACCTCAGCAAGTAGCCAATTTCCTCAAAACCCAAACCACCATAGAC
CGCGTCAAGCTCTTCGACGCCAACCCCGAATTCCTCCGCGCCTTCGCCCA
CACAAACATCCCCGTCACCGTCACAGTCGGCAACGGCGACATACCTGCCC
TCGCAAAACTCCCCGCCGCCCAGTCCTGGGTCGCTAACAACATCCTGCCG
CATCACCCCCAGACCATCTTCAGATACATCGTCCTCGGCAACGAAATCTT
GGCCACGTCGGATAAAGTCCTCATCGCTTCTCTCCTGCCCGCCATGAGAA
CTCTTAAATCAGCTCTCGATGCTGCCAATCTGAGCAGCGTCCAGGTGTCG
ACACCTCATTCCCTGGGGATTTTATCAACCTCTGAGCCGCCGAGTACCGG
AAGGTTCCGTAAAGGTTACGATAGGCTTATCTTTGCTAGGATTCTCGAGT
TCCACAGACAGACTAAATCCCCGTTTATGGTTTACCCCTACCCGTATTTT
GGGTTCAAGCCTCAGACGCTCAACTACGCTTTGTTTAACCNAAACGCGGC
GTTTTTGATCCT
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