FC931788

Overview
NameFC931788
Unique NameFC931788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:9..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.078e-70
Identity = 134/174 (77.01%), Postives = 141/174 (81.03%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK            +VPFL+LGNKIDIP+AASE+ELRYHLGLSNFTTGKGKVNL DSNVRPLEVFM S
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCS 174          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.731e-69
Identity = 132/174 (75.86%), Postives = 139/174 (79.89%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            MF++DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK             VPFL+LGNKIDIP+AASE+ELRYHLGLSNFTTGKGKV+L  SNVRPLEVFM S
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCS 174          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.333e-68
Identity = 130/174 (74.71%), Postives = 137/174 (78.74%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+             VPFL+LGNKIDIP+AASE+ELRYHLGL+NFTTGKGKV L DS VRPLEVFM S
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCS 174          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.378e-66
Identity = 126/174 (72.41%), Postives = 136/174 (78.16%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            MFL+DWFYGVLASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG IKFKAFDLGGHQIARRVW                   ERF E+KK            NVPFL+LGNKIDIP+AASE+ELRYHLGL+  TTGKG +NLA +NVRP+EVFM S
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCS 174          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.180e-65
Identity = 129/176 (73.30%), Postives = 136/176 (77.27%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLA--DSNVRPLEVFMRS 693
            MFL DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERF+ESKK             VPFL+LGNKID P+AASE+ELRYHLGL+NFTTGKGKV  A  DS VRPLEVFM S
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCS 176          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.686e-52
Identity = 113/179 (63.13%), Postives = 124/179 (69.27%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGN---KIDIPHAASEE-ELRYHLGLSNFT-TGKGKVNLADSNVRPLEVFMRS 693
            MFL+DWFYG+LA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKK               FL L N   +I+ P     +   RYH+G +  +   +GKVNLADSNVRP+EVFM S
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCS 179          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45
Identity = 96/174 (55.17%), Postives = 117/174 (67.24%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            MF+++WF+ +LA LGL  K AKILFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++             +VPFL+LGNKID P A SEEELR  +GL   TTGKGKV L D  +RP+E+FM S
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCS 171          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.148e-44
Identity = 97/174 (55.75%), Postives = 114/174 (65.52%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY VL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++R+    PT +PTSEELSIG  KF  FDLGGH  ARRVW                    RFAESK              VPFL+LGNKID+P A SE EL+  LGL   TTGKGKV L + N+RP+E+FM S
Sbjct:    1 MWIVNWFYDVLSSLGLWNKNAKLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLYQ-TTGKGKVPL-EGNIRPIEIFMCS 172          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.341e-44
Identity = 97/174 (55.75%), Postives = 115/174 (66.09%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            MF+++WF+ VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG +KF  +DLGGH  ARR+W                   ERFAESK              VPFL+LGNKID   A SEE+LR+ LGL   TTGKGK+ L D  +RP+EVFM S
Sbjct:    1 MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCS 171          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 97/174 (55.75%), Postives = 114/174 (65.52%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171          
The following BLAST results are available for this feature:
BLAST of FC931788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1A_ARATH2.078e-7077.01GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM8.731e-6975.86GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH4.333e-6874.71GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR2_SOLLC2.378e-6672.41GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1B_BRACM1.180e-6573.30GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1_TOBAC5.686e-5263.13GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_USTMA8.792e-4555.17Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_YARLI1.148e-4455.75Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_CRYNE3.341e-4455.75Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_NEOFI4.363e-4455.75Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]

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Properties
Property NameValue
Genbank descriptionC34201B12EF PostHarveN Citrus clementina cDNA clone C34201B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931788 ID=FC931788; Name=FC931788; organism=Citrus clementina; type=EST; length=694bp
GGAAGCAGTCCCTGGTTGATTACGTTCGCCCACTGAACTTGCTCATCTTA
GGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGATCTGATTCG
TTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCGTTTCT
AATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTACGGCGT
GCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTTTTTAG
GGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAGATGAG
AGATTGGTTCAACATCAGCCAACACAGTATCCCACATCGGAAGAGCTTAG
TATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCAGATTG
CTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGGTATAC
CTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAACT
GGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCTTGTGT
TAGGAAACAAGATTGACATCCCTCATGCTGCTTCTGAGGAAGAGTTGCGT
TACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTTAATCT
AGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGCGTAGCA
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