FC931790

Overview
NameFC931790
Unique NameFC931790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.300e-52
Identity = 101/165 (61.21%), Postives = 122/165 (73.94%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M NL TQKRLAASV+ CGKRK+W+DPNE++EISNANSRQ IRKLV DGL+IRKP  MHSR   R+ + A+R GRH G GKRKGT +ARMPS                    +GKIDKHLYH LY  +KGNTFKHKRAL+EHIQ+AKAE  R ++++E+ DA+RA+
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 9.041e-52
Identity = 99/165 (60.00%), Postives = 122/165 (73.94%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M NL TQKRLAASV+ CGKRK+W+DPNE++EISNANSRQ +RKL+ DGL+IRKP  MHSR   R+ + A+R GRH G GKRKGT +ARMPS                    +GKIDKHLYH LY  +KGNTFKHKRAL+EHIQ+AKAE  R ++++E+ DA+RA+
Sbjct:    1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 196.438 bits (498), Expect = 1.105e-49
Identity = 101/188 (53.72%), Postives = 124/188 (65.96%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAKNXXXXXXXXXXXXXXXDALIGEE 608
            M NL TQKRLAASVVG GKRK+WLDPNE +EI+ ANSR  IRKLV +G I++K VT+HS++  R   +++R GRH G GKRKGT++AR+PSQ                   AGKIDKHLYH LY  SKGN FKHKRALVEHI +AKA+  R++ L EE +A+R KN               DAL+ E+
Sbjct:    1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEKRDALLKED 188          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 1.034e-47
Identity = 92/166 (55.42%), Postives = 120/166 (72.29%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAKN 542
            MV+L  QKRLA+SV+ CGKRK+WLDPNE ++IS ANSRQ IRKLV DG IIRKP  +HSR+ AR+LN A+R GRH G GKRKGT++AR+P++                     KID+H+YH++Y   KGN FK+KR L+E I K+KAE+AR++ L ++ +AKRAKN
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.304e-47
Identity = 93/165 (56.36%), Postives = 118/165 (71.52%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M  L  QKRLA+SV+ CGK+K+WLDPNE NEI+NANSRQ IRKLV DGLII+KPVT+HSRA  R+   ARR GRH G+GKRKGT +ARMP +                   + KID+H+YH LY  +KGN FK+KR L+EHI K KA+RAR ++L ++ +A+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSK 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.931e-47
Identity = 92/166 (55.42%), Postives = 117/166 (70.48%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAKN 542
            MV+L  QKRLAASV+ CGK K+WLDPNE  +IS ANSRQ IRKLV DG IIRKP  +HSR+ AR LNEA+R GRH G GKRKGT++AR+P++                   + KID+H+YH++Y   KGN FK+KR L+E I K KAE+AR++ L ++ +AKR KN
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.705e-47
Identity = 93/165 (56.36%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M  L  QKRLA+SV+ CGK+K+WLDPNE NEI+NANSRQ IRKLV DGLII+KPVT+HSRA  R+   ARR GRH G+GKRKGT +ARMP +                   A KID+H+YH LY  +KGN FK+KR L+EHI K KA++AR ++L ++ +A+R K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTK 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.756e-47
Identity = 93/165 (56.36%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M  L  QKRLA+SV+ CGK+K+WLDPNE NEI+NANSRQ IRKLV DGLIIRKPVT+HSRA  R+   ARR GRH G+GKRKGT +ARMP +                   + KID+H+YH LY   KGN FK+KR L+EHI K KA++AR ++L ++ +A+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 92/165 (55.76%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M  L  QKRLA+SV+ CGK+K+WLDPNE NEI+NANSRQ IRKL+ DGLIIRKPVT+HSRA  R+   ARR GRH G+GKRKGT +ARMP +                   + KID+H+YH LY   KGN FK+KR L+EHI K KA++AR ++L ++ +A+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 92/165 (55.76%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M  L  QKRLA+SV+ CGK+K+WLDPNE NEI+NANSRQ IRKL+ DGLIIRKPVT+HSRA  R+   ARR GRH G+GKRKGT +ARMP +                   + KID+H+YH LY   KGN FK+KR L+EHI K KA++AR ++L ++ +A+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
The following BLAST results are available for this feature:
BLAST of FC931790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL19B_SCHPO5.300e-5261.2160S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO9.041e-5260.0060S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_YEAST1.105e-4953.7260S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL193_ARATH1.034e-4755.4260S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_ICTPU2.304e-4756.3660S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL192_ARATH3.931e-4755.4260S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL19_DANRE6.705e-4756.3660S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_XENLA8.756e-4756.3660S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT1.144e-4655.7660S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB1.144e-4655.7660S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionC34201C02EF PostHarveN Citrus clementina cDNA clone C34201C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931790 ID=FC931790; Name=FC931790; organism=Citrus clementina; type=EST; length=673bp
GACGAACATCATCCGCCAACGACCGTCGATACGCCGACATCAAGATGGTC
AACCTTACCACCCAGAAGCGCCTCGCCGCCTCCGTGGTCGGCTGCGGCAA
GCGCAAGATTTGGCTCGACCCCAATGAGATGAACGAGATCTCCAACGCCA
ACTCTCGCCAGACCATCCGCAAGCTCGTCAGCGATGGCCTCATCATCCGC
AAGCCCGTCACCATGCACTCCCGTGCCAGCGCCCGCGAGCTCAACGAGGC
CCGCCGAAACGGCCGTCACCGCGGTCTGGGTAAGCGCAAGGGTACCAAGG
ATGCCCGTATGCCCAGTCAAGTTCTTTGGATGCGCCGCATGCGTGTTCTC
CGCCGTCTGCTCGTCCGCTACCGTGCCGCTGGCAAGATCGACAAGCACCT
CTACCACGAGCTTTACCACCTGAGCAAGGGTAACACCTTCAAGCACAAGC
GTGCCCTCGTTGAGCACATCCAGAAGGCTAAGGCTGAGCGTGCACGCGAC
CGTGTCCTTAAGGAGGAGATGGATGCTAAGCGTGCCAAGAACAAGGCTCT
CCGTGAGCGCCGGTTGGAGCGCAAGGAGGCCAAGCGCGATGCTCTGATCG
GCGAGGAGTAAATCTGATACAAAAATTCAATTACCCTTCCGTTGTTTGAC
GATTTCCTTTGCATTCGGCGGTC
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