FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14390 contig Ccv1_Contig14390:12..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.538e-44
Identity = 91/194 (46.91%), Postives = 118/194 (60.82%), Query Frame = 3
Query:   63 LTMSNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            ++ +  Q I CKA V W    PL +E IQV PPK+ EVRVK+LY +VCHTD    +G  P  L+P VLGHEG G+VES G+ V     GD V+P Y+ +CKECE C +  TNLC K  I+  NG M D +SR +  G++L+H   CST+SEY V+    + KV+P       S L C  +TGYGA     KVE+
Sbjct:    1 MSSTAGQVINCKAAVAWSAKAPLSIETIQVAPPKAHEVRVKILYTAVCHTDAYTLDGHDPEGLFPVVLGHEGSGIVESVGEGVTGFAPGDHVVPLYVPQCKECEYCKNPKTNLCQKIRISQGNGFMPDGSSRFTCNGKQLFHFMGCSTFSEYTVVADISLCKVNPEAPLEKVSLLGCGISTGYGAVLNTCKVEE 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.538e-44
Identity = 90/193 (46.63%), Postives = 130/193 (67.36%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSE-GFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLM--LDSTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            S+ + I CKA V    GEPL +EEI V PP+  EVR++++  ++CH+D+   +   P   +PR+LGHE +GVVES G+ VKEV EGD V+PT++ +C +C +C S  +NLC K+P  ++  M   D++SR + + G+ L+H  + S++SEY V+D   VVK+D SI PS A  LSC  +TG GAAW+ AKVEK
Sbjct:   12 SSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPPACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTGVGAAWETAKVEK 204          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.623e-44
Identity = 93/202 (46.04%), Postives = 129/202 (63.86%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAP--LYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPI-ALNGLML-DSTSRMSV---------RGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            +  + ITCKA V WG   PL ++EI V+PP+  EVRVK+LY+S+CHTD+ C  G       +PR+LGHE VG+VES G+ VK+VKEGD VIPT+ GEC EC+ C  E +NLC +Y +  +  +M+ D  +R S          + Q +YH  + ST++EY V+D+  VVK+DP+      S LSC  +TG GAAW  A V++
Sbjct:    4 TQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAERAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDPMKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQMSLLSCGVSTGVGAAWNIANVKE 205          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 3.426e-44
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 3
Query:   78 SQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +Q I CKA V W  G+PL +EEI+V PPK+ EVR+K+L  +VCHTD     G  P   +P +LGHEG G+VES G+ V ++K GD VIP YI +C EC+ C +  TNLC K  +    GLM D TSR + +G+ ++H    ST+SEY V+    V K+DPS        L C  +TGYGAA   AKVE
Sbjct:    3 NQVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKVE 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.947e-43
Identity = 88/188 (46.81%), Postives = 116/188 (61.70%), Query Frame = 3
Query:   78 SQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +Q I CKA V W  G+PL +EEI+V PP++ EVR+K++  +VCHTD     G  P   +P +LGHEG G+VES G+ V ++K GD VIP YI +C EC+ C +  TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DPS        L C  +TGYGAA   AKVE
Sbjct:    3 NQVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKVE 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.947e-43
Identity = 84/193 (43.52%), Postives = 119/193 (61.66%), Query Frame = 3
Query:   66 TMSNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            T +  + I C A + W   +PL +EE++V PPKS EVR+K+L++ VCHTD    EG  P  ++P +LGHEG G+VES G+ V  VK GD VIP Y+ +C EC+ C +  TNLC K  +    G+M D T+R + +G++++H   CST+SE+ V+    + KV+P         L C  +TGYGAA   A VEK
Sbjct:    1 TDATGKPIKCMAAIAWEAKKPLSIEEVEVAPPKSGEVRIKILHSGVCHTDAYTLEGIDPEGIFPVILGHEGAGIVESIGEGVTSVKPGDTVIPLYVPQCYECKFCLNPKTNLCQKIRVTQGKGVMPDGTTRFTCKGKEVFHFMGCSTFSEFTVVAEISIAKVNPKAALDKVCLLGCGISTGYGAALNTAAVEK 193          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.461e-43
Identity = 88/188 (46.81%), Postives = 115/188 (61.17%), Query Frame = 3
Query:   78 SQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +Q I CKA V W  G+PL +EE++V PPK+ EVR+K++  +VCHTD     G  P   YP +LGHEG G+VES G+ V ++K GD VIP YI +C EC+ C +  TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DP         L C  +TGYGAA   AKVE
Sbjct:    3 NQVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGNYPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAALNAAKVE 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.102e-42
Identity = 88/188 (46.81%), Postives = 114/188 (60.64%), Query Frame = 3
Query:   78 SQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            ++ I CKA V W  G+PL +EEI+V PPK+ EVR+K+   +VCHTD     G  P   +P +LGHEG G+VES G+ V  +K GD VIP YI +C EC+ C +  TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DPS        L C  +TGYGAA   AKVE
Sbjct:    3 NKVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIFATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTNLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAALNTAKVE 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSJ (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.455e-42
Identity = 81/189 (42.86%), Postives = 121/189 (64.02%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC--LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I CKA V W  G+PL +EE++V PP++ EVRVK+LY ++CHTD+   E     P++PR+LGHE  G+VES G+ V E+  GD V+P + GECKEC++C SE +N+C  L+  +    ++ D  SR +++G+ ++H    ST+SEY VI    + K++P         LSC F+TG+GA    AK +K
Sbjct:    6 KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEESNMCDLLRINVDRGVMIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGFSTGFGATVNVAKPKK 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.455e-42
Identity = 81/189 (42.86%), Postives = 121/189 (64.02%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC--LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I CKA V W  G+PL +EE++V PP++ EVRVK+LY ++CHTD+   E     P++PR+LGHE  G+VES G+ V E+  GD V+P + GECKEC++C SE +N+C  L+  +    ++ D  SR +++G+ ++H    ST+SEY VI    + K++P         LSC F+TG+GA    AK +K
Sbjct:    6 KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELAPGDHVLPVFTGECKECDHCKSEESNMCDLLRINVDRGVMIGDGKSRFTIKGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGFSTGFGATVNVAKPKK 194          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADHX_CAEEL1.538e-4446.91Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADHL7_ARATH1.538e-4446.63Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]
ADHL3_ARATH2.623e-4446.04Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]
ADHX_MOUSE3.426e-4447.87Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
ADHX_RAT4.947e-4346.81Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADHX_OCTVU4.947e-4343.52Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]
ADHX_BOVIN6.461e-4346.81Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADHX_RABIT1.102e-4246.81Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
ADH2_ORYSJ2.455e-4242.86Alcohol dehydrogenase 2 OS=Oryza sativa subsp. jap... [more]
ADH2_ORYSI2.455e-4242.86Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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