FC931803

Overview
NameFC931803
Unique NameFC931803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13225 contig Ccv1_Contig13225:20..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 8.356e-95
Identity = 170/177 (96.05%), Postives = 174/177 (98.31%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVP+ILVGTKLDLRDDK FLADH GAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKVV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVV 177          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.058e-93
Identity = 167/177 (94.35%), Postives = 173/177 (97.74%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVP+ILVGTKLDLRDDKQF  DH GAVPITT QGEEL+KLIG+P+YIECSSKTQQNVKAVFDAAIKVV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVV 177          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 2.688e-93
Identity = 168/177 (94.92%), Postives = 172/177 (97.18%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPELRHYAPGVP+ILVGTKLDLRDDKQF  DH GAVPI+TAQGEELRKLIGA  YIECSSKTQQN+KAVFDAAIKVV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVV 177          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.021e-92
Identity = 165/177 (93.22%), Postives = 173/177 (97.74%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVP++LVGTKLDLRDDKQF  DH GAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKVV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVV 177          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.742e-92
Identity = 162/177 (91.53%), Postives = 174/177 (98.31%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYENV+KKW+PELRHYAPGVP+ILVGTKLDLRDDKQF A+H GAVPI+TAQGEEL+KLIGAP YIECS+KTQQNVKAVFDAAIKVV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVV 177          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.070e-92
Identity = 166/177 (93.79%), Postives = 170/177 (96.05%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPEL+HYAPGVP+ILVGTKLDLRDDKQF  DH GAVPITTAQGEELRK IGAP YIECSSKTQ NVK VFDAAIKVV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVV 177          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 8.647e-92
Identity = 164/177 (92.66%), Postives = 172/177 (97.18%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVP+ILVGTKLDLRDDKQF  DH GAVPITTAQGEELRKLI AP YIECSSK+QQNVKAVFDAAI+VV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVV 177          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 335.495 bits (859), Expect = 1.475e-91
Identity = 162/177 (91.53%), Postives = 172/177 (97.18%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVP++LVGTKLDLRDDKQF  DH GAVPITTAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAI+VV
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVV 177          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 1.926e-91
Identity = 164/175 (93.71%), Postives = 170/175 (97.14%), Query Frame = 1
Query:  130 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVP+ILVGTKLDLRDDKQF  DH GAVPITT QGEEL+KLIG+ VYIECSSKTQQNVKAVFDAAIKVV
Sbjct:    2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKVV 176          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.286e-91
Identity = 161/177 (90.96%), Postives = 172/177 (97.18%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVP++LVGTKLDLRDDKQF  DH GAVPITTAQGEEL+KLIGAP YIECSSKTQ+NVK VFDAAI+VV
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVV 177          
The following BLAST results are available for this feature:
BLAST of FC931803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_LOTJA8.356e-9596.05Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC5_ARATH2.058e-9394.35Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC5_ORYSJ2.688e-9394.92Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC1_BETVU1.021e-9293.22Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC3_ARATH1.742e-9291.53Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC6_ORYSJ5.070e-9293.79Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RHO1_PEA8.647e-9292.66Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC11_ARATH1.475e-9191.53Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC4_ARATH1.926e-9193.71Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]
RAC1_ARATH3.286e-9190.96Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC34201D03EF PostHarveN Citrus clementina cDNA clone C34201D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931803 ID=FC931803; Name=FC931803; organism=Citrus clementina; type=EST; length=654bp
CTATCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGCACTTGTTCTGAG
TTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAACACAGAGGCT
GTCTCAAGTGCACGTGGCGCGAGATGAGTGCGTCGAGGTTCATAAAGTGC
GTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCATTTCTTA
CACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTGACAATT
TCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGGTTGTGG
GACACTGCAGGCCAGGAAGATTACAATAGACTAAGGCCATTGAGCTACCG
TGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCATTAGCAAGGCCAGCT
ATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCT
GGTGTTCCAATGATTCTTGTCGGGACGAAGCTCGATCTTCGGGATGATAA
GCAGTTCCTTGCAGATCACCATGGTGCAGTGCCAATTACCACGGCCCAAG
GGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATCGAGTGTAGT
TCCAAGACACAACAGAATGTGAAAGCTGTCTTTGATGCAGCCATCAAGGT
GGTT
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