FC931808

Overview
NameFC931808
Unique NameFC931808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10954 contig Ccv1_Contig10954:23..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_OLTVI (Putative septum site-determining protein minD OS=Oltmannsiellopsis viridis GN=minD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29
Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = 1
Query:  280 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            +S+ARLG+ VV +DA                  YT +++L+G CRLDQAL+RDKRW N  LL ISK R +  +    K +  ++E+L   Q+   D+ILIDCPAGID GFI A++PA EA++VTTP+ITS+RDADR
Sbjct:   75 MSIARLGYRVVLVDADIGLRNLDLLLGLENRVLYTAMDILDGQCRLDQALIRDKRWKNLSLLAISKNRQRYNVT--RKRMNMLIESL---QKQGYDYILIDCPAGIDVGFINAVSPAKEAIIVTTPEITSIRDADR 205          
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_MESVI (Putative septum site-determining protein minD OS=Mesostigma viride GN=minD PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 67/136 (49.26%), Postives = 87/136 (63.97%), Query Frame = 1
Query:  280 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            +S+ARLG+ V  IDA                  YT +EV  G+C LDQAL+RDKRWSN  LL ISK R +  L    + +  +V++++ R     +FILIDCPAGID GF+ A+ PA EAV+VTTP+ITS+RDADR
Sbjct:   40 MSIARLGYKVALIDADVGLRNLDLLLGLENRVIYTAMEVFEGECCLDQALIRDKRWSNLALLAISKTRQRYHLT--RRNMEMLVDSIRLRNY---NFILIDCPAGIDVGFVNAVAPAEEAVVVTTPEITSIRDADR 170          
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_NEPOL (Putative septum site-determining protein minD OS=Nephroselmis olivacea GN=minD-A PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28
Identity = 64/136 (47.06%), Postives = 87/136 (63.97%), Query Frame = 1
Query:  280 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            + +ARLG+ V  IDA                  YT +EV+ G CRL+QAL+RDKRW N  +L +SK R +  +    K +  +V+++K R      +ILIDCPAGIDAGF+ AI PA+EA+LVTTP+IT++RDADR
Sbjct:   36 MCIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAMEVIEGQCRLEQALIRDKRWKNLSMLAMSKNRQRYNMT--RKNMMMIVDSIKER---GYQYILIDCPAGIDAGFVNAIAPADEAILVTTPEITAIRDADR 166          
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_CHLVU (Putative septum site-determining protein minD OS=Chlorella vulgaris GN=minD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 65/136 (47.79%), Postives = 85/136 (62.50%), Query Frame = 1
Query:  280 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            +S+ARLG+ V  IDA                  YT ++++ G CRLDQAL+RDKRW N  LL ISK R K  +    K +  +++++K   E    F+LIDCPAGID GFI AI  A EAV+VTTP+IT++RDADR
Sbjct:   39 MSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDIVEGQCRLDQALIRDKRWKNLALLAISKNRQKYNVT--RKNMQNLIDSVK---ELGFQFVLIDCPAGIDVGFINAIASAQEAVIVTTPEITAIRDADR 169          
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_PSEAK (Putative septum site-determining protein minD OS=Pseudendoclonium akinetum GN=minD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 66/136 (48.53%), Postives = 85/136 (62.50%), Query Frame = 1
Query:  280 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            +S+ARLG+ VV IDA                  YTV++V  G CRLDQAL+RDKRW N  LL ISK R +  +    K +  +V+AL +       +ILIDCPAGID GFI AI+PA EA++VTT +I ++RDADR
Sbjct:   64 MSIARLGYKVVLIDADIGLRNLDLLLGLENRILYTVMDVFEGQCRLDQALIRDKRWKNLSLLSISKNRQRYNVT--RKNMQNLVKALANLNFR---YILIDCPAGIDVGFINAISPAQEALIVTTSEIPAIRDADR 194          
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_SYNY3 (Septum site-determining protein minD OS=Synechocystis sp. (strain PCC 6803) GN=minD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.102e-21
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  283 SLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            +LARLG  VV IDA                  YT ++VL  +C +D+ALV+DKR  N  LL  ++ RSK  +    + +  +VE LK +     D+I+IDCPAGI+AGF  A+ PA EA++VTTP+++++RDADR
Sbjct:   26 ALARLGKKVVLIDADFGLRNLDLLLGLEQRIVYTAIDVLADECTIDKALVKDKRLPNLVLLPAAQNRSKDAIN--AEQMQSLVEQLKDKF----DYIIIDCPAGIEAGFRNAVAPAQEAIIVTTPEMSAVRDADR 154          
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_GUITH (Putative septum site-determining protein minD OS=Guillardia theta GN=minD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.319e-20
Identity = 56/136 (41.18%), Postives = 83/136 (61.03%), Query Frame = 1
Query:  280 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            ++LA+LG+    IDA                  YT +EVL+G+CRL+QAL++DKR  N  LL  ++ R+K  +    + + ++V  L +      D++LIDCPAGI+ GF  AI PA EA++VTTP+I ++RDADR
Sbjct:   25 MALAQLGYRTALIDADIGLRNLDLLLGLENRVIYTALEVLSGECRLEQALIKDKRQPNLVLLPAAQNRNKDSVT--EEQMKFLVNLLVNDY----DYLLIDCPAGIETGFHNAIGPAQEAIVVTTPEIAAVRDADR 154          
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_EMIHU (Putative septum site-determining protein minD OS=Emiliania huxleyi GN=minD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  280 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            ++LA+L   V+ +DA                  Y  ++VLNG+CRL QAL++DKR  N     +S  + KLP+    + +  +V+ LK+      DFILID PAGID GF  AI  A EA++V TP++TS+RDAD+
Sbjct:   25 IALAKLEQRVLLLDADVGLKNLDLLLGLENRIVYNGLDVLNGECRLTQALIQDKRQPNLTFFPLSSNQLKLPVT--KEQINDLVDQLKNNY----DFILIDSPAGIDEGFQVAIHTAKEAIVVVTPEVTSIRDADK 154          
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_HELPY (Septum site-determining protein minD OS=Helicobacter pylori GN=minD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  280 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            + LA  G  VVA+D                   Y VV+V+  +C L QAL+ DK+  N   L  S+ + K  L     A+  ++ AL++      D+ILID PAGI++GF  AI  A+ A++V TP+++SLRD+DR
Sbjct:   25 IGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAI--LINALRA----DFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDR 154          
BLAST of FC931808 vs. ExPASy Swiss-Prot
Match: MIND_HELPJ (Septum site-determining protein minD OS=Helicobacter pylori J99 GN=minD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 1
Query:  280 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR 687
            + LA  G  VVA+D                   Y VV+V+  +C L QAL+ DK+  N   L  S+ + K  L     A+  ++ AL++      D+ILID PAGI++GF  AI  A+ A++V TP+++SLRD+DR
Sbjct:   25 IGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAI--LINALRA----DFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDR 154          
The following BLAST results are available for this feature:
BLAST of FC931808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
MIND_OLTVI1.340e-2949.26Putative septum site-determining protein minD OS=O... [more]
MIND_MESVI4.309e-2849.26Putative septum site-determining protein minD OS=M... [more]
MIND_NEPOL9.600e-2847.06Putative septum site-determining protein minD OS=N... [more]
MIND_CHLVU3.088e-2647.79Putative septum site-determining protein minD OS=C... [more]
MIND_PSEAK2.002e-2548.53Putative septum site-determining protein minD OS=P... [more]
MIND_SYNY35.102e-2142.96Septum site-determining protein minD OS=Synechocys... [more]
MIND_GUITH4.319e-2041.18Putative septum site-determining protein minD OS=G... [more]
MIND_EMIHU3.095e-1840.44Putative septum site-determining protein minD OS=E... [more]
MIND_HELPY4.626e-1436.76Septum site-determining protein minD OS=Helicobact... [more]
MIND_HELPJ4.626e-1436.76Septum site-determining protein minD OS=Helicobact... [more]

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Properties
Property NameValue
Genbank descriptionC34201D08EF PostHarveN Citrus clementina cDNA clone C34201D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931808 ID=FC931808; Name=FC931808; organism=Citrus clementina; type=EST; length=687bp
GAAATGATCTCATATTCAATTTCATTCAATTGACAAAACCCTGAAACCCT
AATTCACTAACCAATGCTTTCTCTCATTCCCTCTCCAACAATCCAATTCA
AACCGCTATTCCCTTCCAAAACCATCAAACCCCTTAAACCCTTTTCTTCA
AAATCCAGCATCCAATCCGTTCTTCAATGGAACCGGAAGCCCGAGCTCGC
CGGCGAGACCCCGCGCGTGGTCGTCATCACCTCCGGTAAAGGCGGCGTTG
GCAAGACTACCACGACCGCCAACGTCGGCCTCTCTCTAGCTCGTTTAGGC
TTCTCCGTCGTCGCTATCGACGCCGATGTCGGCCTCCGCAACCTCGACCT
CCTCCTAGGCCTCGAAAACCGCGTCAATTACACCGTCGTCGAGGTCCTTA
ATGGCGACTGCCGCCTCGACCAGGCTTTGGTTCGGGACAAACGGTGGTCG
AATTTCGAATTGCTCTGCATATCGAAGCCAAGATCGAAACTTCCATTAGG
GTTTGGCGGGAAAGCCCTCACTTGGGTTGTTGAAGCTTTAAAATCGCGAC
AAGAAGGTAGCCCTGATTTTATTTTGATTGATTGTCCAGCCGGCATTGAC
GCTGGGTTTATAACGGCGATAACGCCGGCTAATGAAGCTGTGTTAGTTAC
AACGCCTGATATAACTAGCTTAAGAGATGCTGATAGA
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