FC931818

Overview
NameFC931818
Unique NameFC931818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931818_ssr113 microsatellite FC931818_ssr113:113..124. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13853 contig Ccv1_Contig13853:134..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931818 vs. ExPASy Swiss-Prot
Match: ZIP2_ARATH (Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.343e-36
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 1
Query:  160 NLRSKPLILVKIWCLMIIFVGTFVGGVSPYFLKWNEGFLVLGTQFAGGVFLGTALMHFLSDANETFGGLTSKEYPFAFMLACAGYLFTMLADCAISFV 453
            NLRSK L+LVKI+C++I+F  TF+ GVSPYF +WNE FL+LGTQF+GG+FL TAL+HFLSDANETF GL  KEYP+AFMLA AGY  TMLAD A++FV
Sbjct:   54 NLRSKSLVLVKIYCIIILFFSTFLAGVSPYFYRWNESFLLLGTQFSGGIFLATALIHFLSDANETFRGLKHKEYPYAFMLAAAGYCLTMLADVAVAFV 151          
BLAST of FC931818 vs. ExPASy Swiss-Prot
Match: ZIP11_ARATH (Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.533e-35
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 1
Query:  160 NLRSKPLILVKIWCLMIIFVGTFVGGVSPYFLKWNEGFLVLGTQFAGGVFLGTALMHFLSDANETFGGLTSKE--------YPFAFMLACAGYLFTMLADCAISFVLDKKRDASNADLERQG 501
            +L+SK LI VKI CL+IIFV TF+ GVSPYFLKW++GFLVLGTQFAGGVFL TALMHFLSDA+ETF GL + E        YPFA+MLACAG++ TMLAD  I+ +  K ++    DLE QG
Sbjct:   39 DLKSKSLISVKIACLVIIFVLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHIYSKTQN----DLELQG 156          
The following BLAST results are available for this feature:
BLAST of FC931818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZIP2_ARATH1.343e-3671.43Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2... [more]
ZIP11_ARATH2.533e-3563.93Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP... [more]
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Properties
Property NameValue
Genbank descriptionC34201E07EF PostHarveN Citrus clementina cDNA clone C34201E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931818 ID=FC931818; Name=FC931818; organism=Citrus clementina; type=EST; length=653bp
ATATAATTATTTGTCTGACATCCAACGGAAACCAAATTAACCATGTCTCG
TTTTCTATTAGCATTAGCCATCTTTCTCTCTCTGATTCTGCTGACCACCG
CTCACAGCGGCCACGACGACGACGAGGACGAGGATAACGGTACTGAAACT
GAGCCCCACAACCTCCGTTCAAAGCCGTTAATATTGGTTAAGATATGGTG
TTTGATGATAATCTTTGTGGGCACGTTCGTTGGTGGGGTGTCACCTTATT
TTTTGAAGTGGAACGAGGGGTTTCTTGTGCTGGGGACTCAGTTTGCTGGG
GGAGTGTTTCTGGGGACTGCTTTGATGCATTTTCTAAGTGACGCTAATGA
GACTTTTGGGGGCTTGACTAGTAAAGAGTATCCCTTTGCCTTTATGTTAG
CTTGTGCTGGGTATTTGTTTACTATGTTGGCTGATTGTGCGATTTCTTTT
GTGCTTGACAAGAAGAGGGATGCTTCTAATGCTGATCTTGAGCGTCAAGG
GGGTCTGGAGCGGGGGAAAAGCAGTCACCATTCTGCTACTTCACAATCAG
TTTCTCAGGGCCAAAATGGTACAGATGGGCATTCTTCANAATTTTCGCTT
ACAGCTGCCAGTTCGCTTGAGGATAGCATCTTATTAATTGTCGCCCTGTG
TTT
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