FC931821

Overview
NameFC931821
Unique NameFC931821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10222 contig Ccv1_Contig10222:543..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931821 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 54/229 (23.58%), Postives = 105/229 (45.85%), Query Frame = 3
Query:    3 LFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVVAIWLSVRDGLKNPARDYSIPG-TTATKIFESIGACANLVFAF-NTGMLPEIQATIRQ----PVVENMMKALYFQFSVGVLPMFAVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHIFASPMYEFLDTKYGIKGNALAVRNLTFRVTVKSGYLAINTLVSALLPF 671
            LF   +H  +  Y +  A     L     P+ +++ +   ++ ++S +Y ++A   S+  G ++    Y + G T A+ +F++      + FAF    ++ EIQATI      P  + M K +   + + ++    V   GYWA               P W+ AAAN   F+  + +  +FA  +++ +++ Y +K       + T R+  +S Y+A+  LV+  +PF
Sbjct:  150 LFPNLEHIRQTYYILGFAALQLVLSQS--PDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYIIVIICYLFVAISGYWAFGAHVEDDVLISLERPAWLIAAANFMVFIHVIGSYQVFAMIVFDTIES-YLVK-TLKFTPSTTLRLVARSTYVALICLVAVCIPF 374          
BLAST of FC931821 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 53/201 (26.37%), Postives = 93/201 (46.27%), Query Frame = 3
Query:   87 IPNLSALGVWLGVSTVLSTIYIVVAIWLSVRDGLKNPARDYSIPGTTAT-KIFESIGACANLVFAF-NTGMLPEIQATI----RQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHIFASPMYEFLDTKYGIKGNALAVRNLTFRVTVKSGYLAINTLVSALLPF 671
            +PN +++ +    + V+S  Y  +A   SV  G+ +P  DYS   +T   K+F  + A  ++ FA+    ++ EIQATI      P    M + +   + V  +  F V F+GY+                P+W+ A AN+   +  + +  IFA P+++ L+T    K N     +   R   +S Y+A   +V+  +PF
Sbjct:  170 LPNFNSISIISLAAAVMSLTYSTIAWAASVHKGV-HPDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSVDDNILITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVFDMLETVLVKKMNFNP--SFKLRFITRSLYVAFTMIVAICVPF 367          
The following BLAST results are available for this feature:
BLAST of FC931821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LHTL5_ARATH4.105e-1223.58Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHT2_ARATH4.539e-1126.37Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC34201E10EF PostHarveN Citrus clementina cDNA clone C34201E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931821 ID=FC931821; Name=FC931821; organism=Citrus clementina; type=EST; length=672bp
TTCTTTTTTGGAAGGATGACCACACTATGAAGCTTCCATACTTTATTGCC
ATAGCTGGGTTTGTATGTGCCTTGTTTGCCATAGGGATACCCAATCTTTC
AGCTCTTGGAGTTTGGCTGGGAGTTTCAACAGTTCTCTCCACGATATACA
TTGTTGTAGCAATTTGGCTGTCAGTTCGCGATGGACTAAAAAATCCAGCA
CGAGATTACAGCATCCCTGGAACAACTGCTACCAAAATCTTTGAATCAAT
AGGGGCATGTGCTAATCTGGTGTTTGCGTTCAATACTGGAATGCTTCCTG
AAATACAGGCAACAATAAGGCAGCCTGTTGTAGAAAACATGATGAAAGCT
TTGTACTTTCAATTCTCAGTTGGAGTTCTACCAATGTTTGCTGTGACATT
TGTCGGGTACTGGGCTTACGGGAATTCCTCATCAAGCTATTTGCTCAATA
ATGTCAGTGGTCCGGTTTGGATGAAGGCCGCTGCCAATATTTCTGCCTTC
CTGCAATCAGTCATTGCTTTGCATATATTTGCAAGCCCAATGTACGAGTT
CTTGGATACCAAGTATGGGATTAAAGGAAATGCTCTGGCAGTTCGCAACT
TAACGTTCAGAGTTACTGTAAAGAGTGGCTACCTAGCCATTAACACGCTG
GTTTCAGCTCTTCTGCCATTTC
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