FC931824

Overview
NameFC931824
Unique NameFC931824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15396 contig Ccv1_Contig15396:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931824 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.574e-52
Identity = 108/199 (54.27%), Postives = 123/199 (61.81%), Query Frame = 1
Query:  130 GYASH----------HGGPPSSQPYSAQYGAPPTAQPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDWDRSGKIDTNELREALMSLG 696
            GY +H          +GG P    +   YG  P    +   YGAPP    YG+                                  PFASL+PS+FPPGTDPNIVACFQ ADRDNSG IDDKELQGALSSYNQSFS+RTV LLMY FTN+N RKIGPKEF  +F SLQNWR++FE+ D DRSG+IDTNELR+ALMSLG
Sbjct:   99 GYGAHPSSGPSDYGGYGGAPQQSGHGGGYGGAPQQSGHGGGYGAPPPQASYGS----------------------------------PFASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTNSNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLG 263          
BLAST of FC931824 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.322e-48
Identity = 108/216 (50.00%), Postives = 126/216 (58.33%), Query Frame = 1
Query:  136 ASHHGGPPSSQPYS---AQYGAPPTAQPYSAQYGAPPTA---------------QP------YGARP-----HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDWDRSGKIDTNELREALMSLG 696
            +S +G PP S PY+     Y  PP  +PY   YGAPP +               QP      YGA P                                    +PFASL+PS F PGTDPNIVACFQ AD+D SG IDDKELQGALSSY Q FS+RTV LLMY FTN+NA KIGPKEF  +F+SLQNWR++FE+ D DRSG+ID NELR+AL+SLG
Sbjct:   67 SSSYGAPPPSAPYAPSPGDYNKPPKEKPYGGGYGAPPPSGSSDYGSYGAGPRPSQPSGHGGGYGATPPHGVSDYGSYGGAPPRPASSGHGGGYGGYPPQASYGSPFASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSNAMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSLG 282          
BLAST of FC931824 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 60/194 (30.93%), Postives = 86/194 (44.33%), Query Frame = 1
Query:  127 QGYASHHGGPPS-SQPYSAQYGAPPTAQPYSAQYGAPPTAQPYGA-RPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASL-MPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDWDRSGKIDTNELREALMSLG 696
            QGY+   G  P   QP  A Y   P A  Y + YG+ P  Q YG   P+                               P+       + PPG +P     F   D D SG I+ KEL+ AL ++N S F+  T  +++  F  T + ++    F  ++  LQ WRA F++ D DRSG I+TNE+ +AL  +G
Sbjct:    7 QGYSGPGGNAPQWQQPPRAPYAGGPAAGQYGSPYGSAPPGQQYGGGSPYGSYGQPGPRAPYGGGQAPGGPYGGYGQPQGGPYRQQGSAGNVPPGVNPEAYQWFSTVDSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMFDKTKSGRVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQALSQMG 200          
BLAST of FC931824 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 45/106 (42.45%), Postives = 70/106 (66.04%), Query Frame = 1
Query:  388 FPPGTDPNIVACFQLADRDNSGLIDDKELQGALS-SYNQSFSLRTVRLLM--YTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDWDRSGKIDTNELREALMSLG 696
            F P T P IV  F+ ADR+ SG +++ EL+ ALS S     S RT+RLL+  Y     +  ++GPKE++++++ L  WRA+F + D DRSGK+++ +LR+A  +LG
Sbjct:   49 FSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNLG 154          
BLAST of FC931824 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 63/208 (30.29%), Postives = 89/208 (42.79%), Query Frame = 1
Query:  127 QGYASHHGGPPSSQPYSAQYGAPPTA---QPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-----PFASLMPSSF---------PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDWDRSGKIDTNELREALMSLG 696
            QGY    G PP + P +  YG        QP +A YG P    PYG+ P                               +     P+ S    S+         PPG DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  ++M  F  +N+ +I    F  ++  +Q WR +F++ D DRSG I+  EL +AL  +G
Sbjct:    8 QGYHGAAGQPPGA-PQTNYYGGQQYGGGVQP-AASYGRPAPGAPYGSPPSGGVYGHPVPGSAAPGAPGGPYGGQAPGGPYSVPGSTPYGSQQHGSYGQGAPAGNIPPGVDPEAFSWFQTVDTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMFDKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQALCQMG 213          
BLAST of FC931824 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 60/190 (31.58%), Postives = 80/190 (42.11%), Query Frame = 1
Query:  130 GYASHHGGPPSSQPYSAQYGAPPTAQPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDWDRSGKIDTNELREALMSLG 696
            GY S  GG PS  P S  YG  P   PY    G  P   PYG +P                                          PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  LQ WR +F++ D DRSG I + EL++AL  +G
Sbjct:   56 GYPSA-GGVPSGTP-SGPYGGIPPGGPY----GQLPPGGPYGTQPGHYGQ----------------------------------GGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMG 205          
BLAST of FC931824 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 59/196 (30.10%), Postives = 82/196 (41.84%), Query Frame = 1
Query:  130 GYASHHGGPPSSQPYSAQYGAPPTAQPYSAQYGAPPTAQPYG-ARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSF-----PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDWDRSGKIDTNELREALMSLG 696
            GY S  GG PS  P     G PP        YG  P   PYG A P                               +P+ +  P  +     PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T   +I    F  ++  LQ W+ +F++ D D SG I + EL++AL  +G
Sbjct:   55 GYPSA-GGTPSGTPGGPYGGGPP-----GGPYGGGPPGGPYGQAHP-------------------------------SPYGTQPPGPYGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKTGRIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQQALSQMG 213          
BLAST of FC931824 vs. ExPASy Swiss-Prot
Match: PEF1_HUMAN (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 57/200 (28.50%), Postives = 83/200 (41.50%), Query Frame = 1
Query:  139 SHHGGPPSSQPYSAQYGAPPTAQPYSAQYGAPPTAQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSF-------------PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDWDRSGKIDTNELREALMSLG 696
            S++ GPP+S     QYG+     P    YG P    PYG                                   P+    PSS+             PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  +Q W+ +F++ D DRSG I   EL++AL  +G
Sbjct:   24 SYYPGPPNS---GGQYGS---GLPPGGGYGGPAPGGPYGP---PAGGGPYGHPNPGMFPSGTPGGPYGGAAPGGPYGQPPPSSYGAQQPGLYGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMG 214          
The following BLAST results are available for this feature:
BLAST of FC931824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CML49_ARATH2.574e-5254.27Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH1.322e-4850.00Probable calcium-binding protein CML50 OS=Arabidop... [more]
PEF1_DANRE2.431e-1830.93Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
CML48_ARATH1.022e-1642.45Probable calcium-binding protein CML48 OS=Arabidop... [more]
PEF1_XENLA2.516e-1530.29Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
PEF1_MOUSE3.633e-1431.58Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
PEF1_RAT2.355e-1330.10Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1[more]
PEF1_HUMAN6.852e-1328.50Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34201F01EF PostHarveN Citrus clementina cDNA clone C34201F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931824 ID=FC931824; Name=FC931824; organism=Citrus clementina; type=EST; length=698bp
GAAGAAAACAAATTCAACCGAAGAAACTTTAGACGCGTCGGCTCTCTCTC
GAGATTCCACAACATGTCCGGCTATCCCCAACCTCCGCCCGGCTACGGCT
ACGGCTCCGCACAGCCTCCGAGTTCTCAGGGCTACGCTTCCCATCACGGC
GGGCCGCCGAGTTCTCAGCCCTACTCTGCTCAGTACGGCGCGCCGCCGAC
GGCTCAGCCCTACTCTGCTCAGTACGGCGCACCGCCGACGGCTCAGCCCT
ACGGGGCACGGCCACACGCGGCTCCGTCCGCACCCTCTTACGGCGGGCCT
TCTCCGGCTCCTGCTTCTGCTCCAGGCGGCTACCCGCCGGCTCCGGGATC
GTACGGTAATCCGTTTGCATCTCTAATGCCGTCCAGTTTCCCTCCCGGAA
CGGATCCGAACATCGTGGCGTGCTTCCAGTTGGCCGACCGGGACAACAGC
GGCCTCATCGACGATAAGGAGTTGCAAGGAGCCTTGTCTTCTTACAATCA
GAGCTTCAGCTTGAGAACCGTTCGTCTGCTTATGTACACATTCACCAACA
CTAACGCGAGAAAAATCGGGCCTAAGGAGTTCATCCAAGTGTTTCACAGT
CTTCAAAACTGGAGGGCCATGTTTGAGAAAGTGGACTGGGACAGGAGTGG
AAAGATTGATACGAATGAGTTGCGGGAGGCTCTTATGAGTCTAGGTCT
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