FC931827
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.658e-49 Identity = 95/121 (78.51%), Postives = 106/121 (87.60%), Query Frame = 3 Query: 174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536 EPVDREKTCPLLLRVFTK GGHH+ E +AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ AARRR+ARLSFAFVYP+ G + VREVG+T +Y R+Q DD K L+EL FEIGDYLDVAI Sbjct: 31 EPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28 Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536 +P+DREKTCPLLLRVFT G H R RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+AI Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28 Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536 +P+DREKTCPLLLRVFT G H R RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+AI Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28 Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536 +P+DREKTCPLLLRVFT G H R RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+AI Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.034e-28 Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 3 Query: 174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536 +P+DREKTCPLLLRVFT G H R RG P E+QIYTW DATL+ELT LVKEV P AR++ +FA V+ D K + V+E+G T S GR+ DD L F+IGDYLD+AI Sbjct: 18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_DROME (Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26 Identity = 59/120 (49.17%), Postives = 82/120 (68.33%), Query Frame = 3 Query: 180 VDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536 +DREKTCP+LLRVF G HHS + G P +E+QIYTW+DATL ELT LV++V P R++ FA VYP+ ++ F +RE+G T + G++ +DD K LA+ F IGD+LD++I Sbjct: 18 IDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGDFLDISI 134
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_CAEEL (Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23 Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 3 Query: 174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVR--GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNG-RFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536 +P+DREK CP+LLRVF H+ + R G P E+Q++TW D +LRELT L+KEV P ARR+ FA V D+ R+++R+VG T + G R +DD K L + FE+GD++DVAI Sbjct: 16 KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTN--GERGIDDNKTLQQCKFEVGDFVDVAI 137 The following BLAST results are available for this feature:
BLAST of FC931827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931827 ID=FC931827; Name=FC931827; organism=Citrus clementina; type=EST; length=708bpback to top |