FC931827

Overview
NameFC931827
Unique NameFC931827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15398 contig Ccv1_Contig15398:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.658e-49
Identity = 95/121 (78.51%), Postives = 106/121 (87.60%), Query Frame = 3
Query:  174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536
            EPVDREKTCPLLLRVFTK GGHH+ E +AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ AARRR+ARLSFAFVYP+  G + VREVG+T +Y  R+Q DD K L+EL FEIGDYLDVAI
Sbjct:   31 EPVDREKTCPLLLRVFTKSGGHHTSEDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151          
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536
            +P+DREKTCPLLLRVFT   G H R     RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536
            +P+DREKTCPLLLRVFT   G H R     RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536
            +P+DREKTCPLLLRVFT   G H R     RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.034e-28
Identity = 66/122 (54.10%), Postives = 80/122 (65.57%), Query Frame = 3
Query:  174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536
            +P+DREKTCPLLLRVFT   G H R     RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   18 KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_DROME (Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 59/120 (49.17%), Postives = 82/120 (68.33%), Query Frame = 3
Query:  180 VDREKTCPLLLRVFTKIGGHHSREGFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536
            +DREKTCP+LLRVF   G HHS   +   G  P +E+QIYTW+DATL ELT LV++V P  R++     FA VYP+ ++  F +RE+G T +  G++ +DD K LA+  F IGD+LD++I
Sbjct:   18 IDREKTCPMLLRVFCSTGRHHSVSEYMF-GNVPTNELQIYTWQDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGDFLDISI 134          
BLAST of FC931827 vs. ExPASy Swiss-Prot
Match: SAP18_CAEEL (Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  174 EPVDREKTCPLLLRVFTKIGGHHSREGFAVR--GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNG-RFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 536
            +P+DREK CP+LLRVF     H+    +  R  G  P  E+Q++TW D +LRELT L+KEV P ARR+     FA V  D+   R+++R+VG T +  G R +DD K L +  FE+GD++DVAI
Sbjct:   16 KPLDREKVCPMLLRVFVANNRHNPMSEYNSRNGGSVPPSELQMHTWMDCSLRELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTN--GERGIDDNKTLQQCKFEVGDFVDVAI 137          
The following BLAST results are available for this feature:
BLAST of FC931827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SAP18_ARATH4.658e-4978.51Histone deacetylase complex subunit SAP18 OS=Arabi... [more]
SAP18_PONAB1.558e-2854.10Histone deacetylase complex subunit SAP18 OS=Pongo... [more]
SAP18_HUMAN1.558e-2854.10Histone deacetylase complex subunit SAP18 OS=Homo ... [more]
SAP18_BOVIN1.558e-2854.10Histone deacetylase complex subunit SAP18 OS=Bos t... [more]
SAP18_MOUSE2.034e-2854.10Histone deacetylase complex subunit SAP18 OS=Mus m... [more]
SAP18_DROME7.236e-2649.17Histone deacetylase complex subunit SAP18 OS=Droso... [more]
SAP18_CAEEL2.574e-2345.97Probable histone deacetylase complex subunit SAP18... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34201F04EF PostHarveN Citrus clementina cDNA clone C34201F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931827 ID=FC931827; Name=FC931827; organism=Citrus clementina; type=EST; length=708bp
ATCAAAATTAATAAGTATTATTATTAATATATATTAATTCGGACATGGAA
ACTTCGAGACCTGAGAGAGGGATGGCGGGAGTAGGAGAAGCGCAAAGAAG
ACAAGCAGGCAGGAGCAGGCCATTACATCCTTCTGGAAGGGGCCCTCCAC
CACCGCCTCCTCGCCCCCGCTTCGAGCCCGTTGATCGCGAGAAGACTTGT
CCTCTGTTGCTTCGAGTTTTCACTAAGATTGGGGGGCACCATTCTAGGGA
GGGTTTTGCAGTCAGAGGCAAGGAACCCAAGGATGAGGTTCAAATTTATA
CATGGAAGGATGCTACTCTTCGTGAACTAACTGATCTGGTTAAAGAAGTA
GCACCGGCTGCAAGAAGAAGGGATGCAAGGCTTTCTTTTGCTTTTGTTTA
TCCCGATAAGAATGGTCGTTTTATGGTGAGAGAGGTGGGGAAGACCTTCT
CTTATGAAGGTAGGAGGCAGTTAGATGATGGCAAAATGTTGGCTGAACTT
GGCTTTGAGATTGGAGATTACTTGGATGTGGCTATCCTATAAAGTTTAAC
TGCGTAATTTGTTTAGATCGGTTATGATACGACTAGATTTGAGACTTGGG
AAAGGGCCTGTTATGTAACTTAGTGATATTTTAGCATGATTTCACACTCT
TTGTTTCAGCCCTGAAGTGTTTGTGATGATCACACTCAGTGCCATTTGGC
TTGTTTTT
back to top