FC931833

Overview
NameFC931833
Unique NameFC931833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931833_ssr683 microsatellite FC931833_ssr683:683..694. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig517 contig Ccv1_Contig517:184..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: Y1770_SYNY3 (Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803) GN=sll1770 PE=3 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.756e-65
Identity = 120/221 (54.30%), Postives = 162/221 (73.30%), Query Frame = 3
Query:    3 KNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA-LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYA 662
            ++AD FRR+FR   WV+VP V+W YT+T++LTLEY+PG+KI+   AL+  G  R ++A     AYL Q+L  GFFHADPHPGNLAV  +   LI+YDFGMMGEI   T+ +L+D  + V EK+A++++  L+ L AL+ T DM  +RRSVQF LDN + + P ++Q++  I +DL+ IA DQPFRFP+TFTFV+RAFSTLEG+G  LDPDF+   VA P+A
Sbjct:  240 RSADTFRRNFRGEDWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMDK-PFEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFA 459          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: Y095_SYNY3 (Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803) GN=sll0095 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.960e-52
Identity = 94/221 (42.53%), Postives = 144/221 (65.16%), Query Frame = 3
Query:    3 KNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            KNA+RFR++F +   VRVP ++W YT   VLTLEY+PG+K+++ +AL+  G N   +    I AYL Q+L  GFF +DPHPGN+AVD    LI+YDFG M E+K   +++++  F+AV  KD  +V++ LI +  ++P GD+S ++R + F LDN     P   +    +GE+++A+ Q QPFR P   TF++++ STL+GI   LDP ++L   + P+ Q
Sbjct:  217 KNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDN-FRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNLIAASQPFIQ 436          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: Y1919_SYNY3 (Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC 6803) GN=slr1919 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.509e-35
Identity = 77/219 (35.16%), Postives = 120/219 (54.79%), Query Frame = 3
Query:    3 KNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPY 659
            +NA++F  +F     V+VP ++W Y+  KVLTLE++ G K+ +   +   G + S I    + + L Q+L+ GFFHADPHPGNL   LD  + Y DFGMM +++  T+E +      +  KD   + +  I L  L P  D++ +  +++    + + QS  Q      I +D   +  D PFR P+ F  +IR+  T EG+   LDP+F + EVA PY
Sbjct:  225 RNAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGSAIGQSV-QDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPY 442          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: Y005_SYNY3 (Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803) GN=sll0005 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.357e-33
Identity = 71/218 (32.57%), Postives = 122/218 (55.96%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPY 659
            N ++F + + ++  + VP ++W YT  +VLT+E+V G+K+  +KA+  QG + + +    ++  L Q+L+ GFFHADPHPGNL    D  L Y DFGMM  I+ + R  L++    +  +D   + +  + L+ L+P  D+  +  ++     N L  S   +    +I + + A+  + PFR P+ +  +IR+  TLEGI   +DP+F +   A PY
Sbjct:  259 NGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASV-AELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPY 475          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: Y1960_ARATH (Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.695e-31
Identity = 72/219 (32.88%), Postives = 119/219 (54.34%), Query Frame = 3
Query:    3 KNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPY 659
            +NA RF++ + +   V VP +FWDYT+ KVLT+E+V G K+NE  A++ QG     +    I+  L Q+L+ GFFHADPHPGNL    D  L + DFGMM E     R  ++     +  +D + + +    L+ L P  D++ +  +++ F D+ L+ +   +     + + L A+    PF  P  +  ++R+ + LEG+    DP+F +   + PY
Sbjct:  302 QNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFDDALNYTV-SELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKVLAASYPY 519          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: YHG1_CLOPA (Uncharacterized protein in hydrogenase 1 5'region (Fragment) OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.105e-26
Identity = 60/220 (27.27%), Postives = 119/220 (54.09%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N  +F++   ++K+VR P         K++ +E + G+KI+ LK L  +GY+  ++  +   +Y  Q+ + GFFH DPHPGNL +  +  + Y DFG+MG I    +  L D   AV   D  K+I  ++ +   +   + +S+  S+++  DN +S S  +   ++ + +++F I+++   + P   T ++++   +EG+   + P+ S+ +V  PY +
Sbjct:  188 NIKKFKKLNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNLLI-RENHICYIDFGIMGTISKSLKISLNDAILAVAYHDVNKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSL-KNIKISVMLQEIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIVDVLIPYVK 405          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: Y1181_ARATH (Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.964e-24
Identity = 68/219 (31.05%), Postives = 112/219 (51.14%), Query Frame = 3
Query:    3 KNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPY 659
            +N  +FR+ +  IK V VP ++ +Y+ +KVL +E+V G K+NE+  L L            +    NQ+L+ GF+HADPHPGN     D  L Y DFGMMG+ +   R+  ++    +  +D K + +  + L  L PT + S+V +++     + +S+          +G DL        FR P  F+ VIR+ + LEGI   + P++ +     P+
Sbjct:  274 QNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDLYL--------VEVGVYCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDAISRGVRNISFGDLLG-DLGKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPW 483          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_NEIMB (Probable ubiquinone biosynthesis protein ubiB OS=Neisseria meningitidis serogroup B GN=ubiB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.171e-23
Identity = 59/218 (27.06%), Postives = 109/218 (50.00%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPY 659
            NA +  R+F+N   + VP VF+DY  + VLT+E++ G  ++++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V  D   I  DFG++G +  + +  L   F A + +D ++V    I+   +        +  +V+   + + ++ P  Q +   +   LF +++            + +    +EG+G  LDPD  L + A P+
Sbjct:  207 NASQLGRNFQNSDMLIVPKVFYDYCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEELEAAVRAVCEPVFNK-PISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPF 423          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_NEIMA (Probable ubiquinone biosynthesis protein ubiB OS=Neisseria meningitidis serogroup A GN=ubiB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.318e-23
Identity = 59/218 (27.06%), Postives = 107/218 (49.08%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPY 659
            NA +  R+F N   + VP VF+DY  + VLT+E++ G  + ++  L   G +  ++A   +E +  Q+ + GFFHAD HPGN+ V  D   I  DFG++G +  + +  L   F A + +D ++V    I+   +        +  +V+   + + ++ P  Q +   +   LF +++            + +    +EG+G  LDPD  L + A P+
Sbjct:  207 NAGQLGRNFHNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEELEAAVRAVCEPVFNK-PISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPDLDLWKTAKPF 423          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFT (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.407e-22
Identity = 62/223 (27.80%), Postives = 110/223 (49.33%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAP 656
            NA   RR +     + VP V W +TA +VLTLE + G+  +++  LD  G +R  ++ + I  +  Q+ +  FFHAD H GN+ VD D A       I  DFG+MG++    +  L + F A++ KD +++ +  ++   + P   +  +  + +   +   ++ P  Q +LA +   LF +A+            + +    +EG+G  LDP+  +  VA P
Sbjct:  208 NASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTR-PLSQISLAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDPELDIWVVARP 429          
The following BLAST results are available for this feature:
BLAST of FC931833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
Y1770_SYNY31.756e-6554.30Uncharacterized protein sll1770 OS=Synechocystis s... [more]
Y095_SYNY34.960e-5242.53Uncharacterized protein sll0095 OS=Synechocystis s... [more]
Y1919_SYNY35.509e-3535.16Uncharacterized protein slr1919 OS=Synechocystis s... [more]
Y005_SYNY31.357e-3332.57Uncharacterized protein sll0005 OS=Synechocystis s... [more]
Y1960_ARATH3.695e-3132.88Uncharacterized aarF domain-containing protein kin... [more]
YHG1_CLOPA6.105e-2627.27Uncharacterized protein in hydrogenase 1 5'region ... [more]
Y1181_ARATH1.964e-2431.05Uncharacterized aarF domain-containing protein kin... [more]
UBIB_NEIMB2.171e-2327.06Probable ubiquinone biosynthesis protein ubiB OS=N... [more]
UBIB_NEIMA6.318e-2327.06Probable ubiquinone biosynthesis protein ubiB OS=N... [more]
UBIB_XYLFT1.407e-2227.80Probable ubiquinone biosynthesis protein ubiB OS=X... [more]

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Properties
Property NameValue
Genbank descriptionC34201F10EF PostHarveN Citrus clementina cDNA clone C34201F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931833 ID=FC931833; Name=FC931833; organism=Citrus clementina; type=EST; length=750bp
GAAAAAATGCTGATAGATTCCGTCGAGATTTTCGGAATATAAAGTGGGTC
CGGGTACCTCTGGTGTTTTGGGATTATACTGCTACAAAGGTGTTGACATT
GGAGTATGTACCAGGAGTTAAGATCAATGAGTTGAAAGCACTAGATTTGC
AGGGTTATAATCGTTCTCAAATTGCACCGCGTGCAATTGAAGCGTACTTG
AATCAGATACTCAAAACTGGTTTCTTTCATGCTGATCCTCATCCTGGAAA
TCTTGCTGTCGATTTAGATGAAGCACTCATCTATTATGATTTTGGTATGA
TGGGGGAGATTAAATCCTTTACCCGTGAAAGATTGCTTGATCTTTTCTAT
GCAGTTTATGAGAAAGATGCCAAAAAGGTTATCCAAAGGTTGATTGATCT
CGAAGCACTTCAACCCACAGGAGATATGTCATCGGTAAGGAGATCCGTGC
AATTTTTCTTGGACAATTTGCTAAGCCAGAGTCCAGATCAGCAGCAGACT
TTGGCTGCAATTGGAGAGGATTTGTTTGCAATAGCTCAAGATCAACCATT
TCGGTTTCCATCCACCTTTACTTTCGTTATAAGGGCATTCTCCACACTTG
AAGGTATCGGCAACATTCTTGACCCAGATTTTTCCCTTTGTGAGGTTGCT
GCACCTTATGCACAGGAGCTATTGGATTTAAACAGCAGCAGCAGTCTGGA
ACACAGCTAGTGGAGCAAATCAGAAACAGCTGATGATGCAGATCTTCGAC
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