FC931834

Overview
NameFC931834
Unique NameFC931834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length770
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931834_ssr78 microsatellite FC931834_ssr78:78..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10264 contig Ccv1_Contig10264:1..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931834 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 6.797e-60
Identity = 118/207 (57.00%), Postives = 144/207 (69.57%), Query Frame = 1 
Query:  100 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVXXXXXXXIXXXXXXXXXXXXXXAIFANKNPGVFAATCLTPADALNARSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPVSGFKPWEENLSCFLDKSMIEMPLIGKNDKLDN-----DSSGSTCSICCLVKNRELNPVEMIPGWIMKIVRESP 705
            PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRV       +              A+FANK PGV+AATCL+  DA+NARSI+NCNVLA SG+ TS E+A+EI D W+KTPFK+PCP SG +PW   +S FLD S+ EM  IGK+   D+     D + ++C ICCL KNRE  PV+++PG  MKIVRE+P
Sbjct:   11 PLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSSEVRGLVCCGTGVGV--AMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNREFTPVDIMPGGSMKIVRETP 215
The following BLAST results are available for this feature:
BLAST of FC931834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DR102_ARATH6.797e-6057.00DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC34201F11EF PostHarveN Citrus clementina cDNA clone C34201F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931834 ID=FC931834; Name=FC931834; organism=Citrus clementina; type=EST; length=770bp
GCAGAATGTCGACTTACTGACTCTCCACTGAACTCATCCCTCGGAATAGT
CAACTCGTAGTGAACCATGGCTGAAAACGCCGCCGCCGCCGCTCCCAGCC
CTCTCAAGATCATCGCAGGCGCCGACTCCTTCGGCGCCGAATTGAAAGAC
GCTCTGGTCTCCCACCTCCGGTCACTCAACATAGACGTGGAAGATCTCGG
CACCTCCGATTACTACTCCATCGGCGCCGAGGTCGGCCGCCGCGTCTCCT
CCTCCGATTCCTCCGACATCACCACACGCGGCGTCGTCGCCTGCGGAACC
GGAGTGGGCGTCGCAATCTTCGCCAACAAAAACCCCGGCGTCTTCGCCGC
CACGTGTCTCACCCCCGCCGACGCCCTGAACGCCCGCTCCATCAACAACT
GCAACGTCCTCGCTGTCTCAGGTATGTCCACTTCCAAAGAATCCGCCGTC
GAAATCCTGGACACGTGGCTTAAAACCCCTTTTAAGGCCCCATGCCCCGT
GTCGGGTTTTAAGCCATGGGAAGAGAACTTGTCGTGTTTTCTCGACAAGT
CAATGATCGAAATGCCCCTGATTGGTAAAAATGATAAATTAGATAATGAT
TCTAGTGGCAGTACTTGTAGCATATGTTGTTTAGTTAAGAACAGGGAATT
GAATCCTGTGGAAATGATTCCCGGGTGGATCATGAAGATTGTTAGGGAGA
GTCCACGTCGGCCATTGTGAGATTAAGGGCGGGAGTGTGGACCTGCGCAT
CACATACATTTGGGCATGAT
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