FC931856

Overview
NameFC931856
Unique NameFC931856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10289 contig Ccv1_Contig10289:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931856 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.087e-73
Identity = 132/197 (67.01%), Postives = 164/197 (83.25%), Query Frame = 3
Query:   78 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVDLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMY 668
            M+RPQDP R FFPFGNPF+ +S K S LS KL+ LL +FE  LA  + KL+PK+K DIL +SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AFSS LT+++QGHLLLQ  LH L+++SP    +A SSLD+W++HI SKNPR+E+CR+IL +LV +L+LPKVKNSAKGKVLMRA+Y
Sbjct:    1 MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNLPKVKNSAKGKVLMRALY 197          
BLAST of FC931856 vs. ExPASy Swiss-Prot
Match: U496D_ORYSI (UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 7.328e-54
Identity = 112/201 (55.72%), Postives = 135/201 (67.16%), Query Frame = 3
Query:   78 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVDLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMY 668
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  + PR+ SC + L  L  +L L KVKNS KGKVLMRA+Y
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCPRLVSCSATLQELAGNLSLMKVKNSVKGKVLMRALY 201          
BLAST of FC931856 vs. ExPASy Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.132e-53
Identity = 112/201 (55.72%), Postives = 135/201 (67.16%), Query Frame = 3
Query:   78 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVDLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS----SPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMY 668
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S     S  Q  RA  SL  W E +  +  R+ SC + L  L  +L L KVKNSAKGKVLMRA+Y
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAGNLSLMKVKNSAKGKVLMRALY 201          
The following BLAST results are available for this feature:
BLAST of FC931856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPS1_ARATH1.087e-7367.01Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
U496D_ORYSI7.328e-5455.72UPF0496 protein 4 OS=Oryza sativa subsp. indica GN... [more]
U496D_ORYSJ2.132e-5355.72UPF0496 protein 4 OS=Oryza sativa subsp. japonica ... [more]
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Properties
Property NameValue
Genbank descriptionC34201H09EF PostHarveN Citrus clementina cDNA clone C34201H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931856 ID=FC931856; Name=FC931856; organism=Citrus clementina; type=EST; length=668bp
GAGGACGCAATAGTGTCTCTAACGCGTCTGCGAAATTTCCTAAGATTTTC
GAGTACTGATTTCGCAAATCCATCAAAATGAGTCGCCCCCAGGATCCACA
CCGTCCTTTCTTCCCATTTGGAAATCCTTTTCGGATGATGTCCCCCAAAG
GTTCTCGTTTGTCTCCCAAGCTTGTATCTCTGTTGGCTGATTTTGAGGAG
ACCTTGGCAGAGAGGCTGAGAAAACTTATGCCGAAAGACAAGGATGATAT
CCTCAACTTATCATGGATGAGACTGGCAATGGAGTCACTTTGTGAGACTC
ACAATGTCATAAAAGACCTTATAACTGAGTTGGAGCTTCCTGTAAGTGAC
TGGGATGAGAAATGGATAGACGTGTACTTAGACATCAGTGTAGACTTGCT
TGATATATGCATTGCTTTTAGCTCTGTTCTCACGAAGGTCAGCCAAGGCC
ACCTATTGCTTCAGTGTGTCTTGCACACTTTGGATTCTTCCTCTCCAACA
CAGTTTGGGCGAGCCTGTTCTTCTCTTGATAACTGGAGGGAGCACATTAG
TTCAAAGAACCCCAGAGTTGAGAGCTGTCGTTCAATCTTAGACAATCTGG
TAGCTTCTTTGGATTTGCCCAAGGTTAAGAACTCAGCCAAAGGGAAGGTT
TTGATGCGCGCAATGTAT
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