FC931857

Overview
NameFC931857
Unique NameFC931857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13388 contig Ccv1_Contig13388:106..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931857 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 75/154 (48.70%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  143 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVS----DNSGQDVSARNMAAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPPPQTAQMTIFYGGQVIVFNDFPADKANEIMQLASNGSSLS 571
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP      D+  QDV           +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVIVFNDF A+KA E++ LAS G++ S
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFPCEASNMDSMVQDV-----------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANS 160          
BLAST of FC931857 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 65/149 (43.62%), Postives = 90/149 (60.40%), Query Frame = 2
Query:  146 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMIDSSLNK-------PPPQTAQMTIFYGGQVIVFNDFPADKANEIMQLASNGSSLS 571
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D SA       + +   +FP+Q+ F+  + +    D  + K       P  Q+A +TIFYGG+V+VF+DF A+KA E++ LA+ GS+ S
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFPC-EASGMDSSA----GQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKS 153          
The following BLAST results are available for this feature:
BLAST of FC931857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10A_ARATH1.098e-2648.70Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH9.619e-2343.62Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionC34201H10EF PostHarveN Citrus clementina cDNA clone C34201H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931857 ID=FC931857; Name=FC931857; organism=Citrus clementina; type=EST; length=702bp
GTTCCCAATTCAATTCTGCAGCGTCAGTTGCAGCGCACTAGTTTTATTTT
TAAAATTTATTTTTGCTTGTGGGTTTCCGCTTCTGAGTTGGTTAAACACA
ACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGCCGGAGAAATC
AAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTGAAAGAGGGAG
GTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACATTGAAGCTAAT
GGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTATGAATTTGTT
TCCAGTAAGCGACAACTCTGGACAAGATGTTTCAGCTCGAAACATGGCAG
CTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAACAAGCTGGTTTT
GCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTTTAAACAAGCC
CCCTCCGCAAACTGCTCAAATGACTATATTTTATGGCGGACAAGTGATTG
TGTTCAATGATTTTCCTGCTGATAAAGCAAATGAAATCATGCAATTAGCA
AGCAACGGGAGCTCACTGAGCCATGGTACCGCTTATCTTCCTATGCAACT
GCCGGCCCAGGGTTACAACTCTTTTGCTGCTAGTTTACCCAAAAGTCCAG
TTGAATCAACTCCCCCGGTTTCTCCTGGCCCCCCGGTTTCTCCTAGTTGC
TC
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