FC931862

Overview
NameFC931862
Unique NameFC931862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25
Identity = 80/210 (38.10%), Postives = 117/210 (55.71%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAA-RTFVLGGLSD 622
            L+RPGRFDR+IFIPKP + GR EILKVHAR K +A DVD   VA  T G  GA+L N++  AA+   R G+ EIT +++ +A      G L+RK    SP+   ++AI+EA  A++ +   D   +  ++I PR G  LG  +      K    +  ++ L + I V L  RAA+E++ G+  ++T        A   A R   + G+SD
Sbjct:  311 LLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARKGKEEITMEEIEEALDRITMG-LERKGMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIEDKH---IYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSD 515          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.120e-24
Identity = 74/205 (36.10%), Postives = 111/205 (54.15%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            LVRPGRFDR I +P P + GR +IL+ H  K   +DDVD + +A  T G  GA+LAN+V VAA+    DG   +T +DL  A   ++R M+  + +    S E+ +  A +E   A+VA++    + +   TI PR GR LG V    +     E   SR+ +L  + V +A R A+EL  G+ ++++  +    NA   AR  V
Sbjct:  375 LVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYA---KDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIHTEGARPVHKATIVPR-GRTLGMVSQLPEK---DETSFSRKQMLAWLDVSMAGRVAEELIFGDSEVTSGASSDFQNATKMARAMV 572          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.030e-23
Identity = 74/210 (35.24%), Postives = 110/210 (52.38%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQ--VAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLG-GLSD 622
            L+RPGRFDR++ + +P   GR EIL VHAR K ++ DVD   +A  T G  GA+L+N++  AAI   R   TEI+ D++  A      G  ++K R     R+  VA +EA  A+V    PD   ++ ++I PR GR  G         + + G+ SR  L + + V L  R A+E+  GE +++T  +         AR  V   G+SD
Sbjct:  316 LMRPGRFDRQVVVDRPDYAGRREILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAARRNLTEISMDEVNDAIDRVLAGP-EKKNRVMSEKRKTLVAYHEAGHALVGALMPDYDPVQKISIIPR-GRAGGLTWFTPSEDRMESGLYSRSYLQNQMAVALGGRIAEEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSD 523          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH4_ARATH (Cell division protease ftsH homolog 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.874e-23
Identity = 73/205 (35.61%), Postives = 109/205 (53.17%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            LVRPGRFDR I +P P + GR +IL+ H  K   A+DVD + +A  T G  GA+LAN+V VAA+    DG  ++T  DL  A   ++R M+  + +    S E+ +  A +E   A+VA++      +   TI PR G  LG V    D     E  +SR+ +L  + V +  R A+EL  GE ++++  +   + A   AR  V
Sbjct:  379 LVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGSKDVTMSDLEFA---KDRIMMGSERKSAVISDESRKLTAFHEGGHALVAIHTEGALPVHKATIVPR-GMALGMVSQLPDK---DETSISRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLEQATKLARAMV 576          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.173e-22
Identity = 70/215 (32.56%), Postives = 113/215 (52.56%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAG-RELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR++ +  P  +GR+ ILKVHAR KP+ +DV  + +A+ T G  GA+LAN++  AAI   R  ++ IT +++ +AA     G+        +  R +A +E   A+          +E +T+ PR G + L +   + D     + +LSR +LL  I   L  RAA+++  GE +++T  +       + AR  V        FG+SN
Sbjct:  341 LLRPGRFDRQVTVNLPDRLGRVGILKVHARNKPLGEDVSLVQLANRTPGFSGADLANLLNEAAILATRYKKSSITKNEVNEAADRIIGGIAGAPMEDTKNKRLIAYHEVGHAITGSVLKSHDEVEKITLTPRGGAKGLTWFTPEED-----QSLLSRSALLARIITTLGGRAAEQVIFGEPEVTTGASSDLQQVTNLARQMV------TRFGMSN 544          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.531e-22
Identity = 75/218 (34.40%), Postives = 121/218 (55.50%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM--LDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR++ + KP   GR+EILKVH +   +A+DVD   +A +T G+ GA+LANI+  AA+   R+ + E+    L +A    ERG+  L++K R  SP+  + VA +E+  AV++        +  V+I PR    LGY     +  K+   ++ +  L+  I V L  RAA++++  E  +ST     A N    A   + G +S  ++G+S+
Sbjct:  333 LLRPGRFDRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAV---ERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEDVFLQE--IST----GASNDLERATDIIKGMVS--YYGMSD 536          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER----SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV 604
            LVRPGRFDR I +P P + GR +IL+ H  K   +DDVD + +A  T G  GA+LAN+V VAA+    DG   +T +DL  A   ++R M+  + +    S E+ +  A +E   A+VA++      +   TI PR G  LG V    D     E  +SR+ +L  + V +  R A+EL  G+ ++++  +     A + AR  V
Sbjct:  382 LVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYA---KDRIMMGSERKSAVISDESRKLTAYHEGGHALVAIHTEGAHPVHKATIVPR-GMALGMVAQLPDK---DETSVSRKQMLARLDVCMGGRVAEELIFGDSEVTSGASSDFQQATAVARAMV 579          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 76/218 (34.86%), Postives = 121/218 (55.50%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM--LDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR++ + KP   GR+EILKVH +   +A+DV+   VA +T G+ GA+LANI+  AA+   R+ + E+    L +A    ERG+  L++K R  SP+  + VA +E+  AV++        +  V+I PR    LGY     +  K+   ++ +  L+  I V L  RAA+E++  E  +ST     A N    A   + G +S  ++G+S+
Sbjct:  327 LMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVKQQHLKEAV---ERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEEVFLEE--IST----GASNDLERATDIIKGMVS--YYGMSS 530          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 75/218 (34.40%), Postives = 121/218 (55.50%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGM--LDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFVLGGLSDXHFGLSN 643
            L+RPGRFDR++ + KP   GR+EILKVH +   +A+DV+   VA +T G+ GA+LANI+  AA+   R+ + E+    L +A    ERG+  L++K R  SP+  + VA +E+  AV++        +  V+I PR    LGY     +  K+   ++ +  L+  I V L  RAA++++  E  +ST     A N    A   + G +S  ++G+S+
Sbjct:  327 LMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAV---ERGIAGLEKKSRRISPKEKKIVAYHESGHAVISEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEDVFLEE--IST----GASNDLERATDIIKGMVS--YYGMSS 530          
BLAST of FC931862 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 66/186 (35.48%), Postives = 102/186 (54.84%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKER--SPETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 553
            L+RPGRFDR++ + +P + GR++ILKVH+R K +  DVDY  VA  T G  GA+L N++  AAI   R    EI+ D++  A +    G  ++K    S E  R VA +EA  A+V    P+   +  ++I PR G+  G         + + G+ SR  L + + V L  R A+E+  G+  ++T
Sbjct:  405 LLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLMNEAAILAARRELKEISKDEISDALERIIAGP-EKKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDENVTT 588          
The following BLAST results are available for this feature:
BLAST of FC931862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
FTSH_AQUAE7.344e-2538.10Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH4_ORYSJ8.120e-2436.10Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH4_SYNY34.030e-2335.24Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FTSH4_ARATH6.874e-2335.61Cell division protease ftsH homolog 4, mitochondri... [more]
FTSH_ODOSI1.173e-2232.56Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH_HELFE1.531e-2234.40Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH5_ORYSJ2.000e-2235.12Cell division protease ftsH homolog 5, mitochondri... [more]
FTSH_HELPJ2.612e-2234.86Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPY5.819e-2234.40Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH5_ARATH2.888e-2135.48Cell division protease ftsH homolog 5, chloroplast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202A03EF PostHarveN Citrus clementina cDNA clone C34202A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931862 ID=FC931862; Name=FC931862; organism=Citrus clementina; type=EST; length=676bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGGGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTAACGATTGCTCCTCGAGCT
GGTAGGGAGTTGGGTTATGTTCGTATGAAAATGGACCACATGAAATTTAA
GGAAGGTATGCTAAGTCGACAATCCTTGCTGGATCATATCACCGTTCAAC
TAGCACCACGTGCAGCTGATGAGCTTTGGTGTGGCGAGGGCCAGCTGAGT
ACAATATGGGCAGAAACAGCAGACAATGCTAGGTCAGCAGCACGGACCTT
TGTTCTTGGTGGACTTTCTGACNAGCATTTTGGGTTATCTAACTTCTGGG
TGGCAGATCGAATTAACGAAATTGAT
back to top