FC931865

Overview
NameFC931865
Unique NameFC931865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931865_ssr324 microsatellite FC931865_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11553 contig Ccv1_Contig11553:185..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931865 vs. ExPASy Swiss-Prot
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.583e-35
Identity = 83/121 (68.60%), Postives = 91/121 (75.21%), Query Frame = 3
Query:  342 RSYHRHSNSMDG-FEVESILGDG--------VKKAVDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 677
            R  H+HS SMDG   +  +L  G         KK++   +LAELALIDPKRAKRI ANRQSAARSKERK RY  ELERKVQTLQTEATTLSAQ+T+LQRDT GLT EN ELKLRLQ MEQQ
Sbjct:  154 RIRHQHSQSMDGSMNINEMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQ 274          
BLAST of FC931865 vs. ExPASy Swiss-Prot
Match: RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 81/122 (66.39%), Postives = 97/122 (79.51%), Query Frame = 3
Query:  342 RSYHRHSNSMDGF--------EVESILGDGV--KKAVDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 677
            R  HRHS+S+DG         +  + L + +  KKA+  ++L++LA IDPKRAKRILANRQSAARSKERK RY +ELERKVQTLQTEATTLSAQ+T+ QRDTTGL+AEN ELK+RLQAMEQQ
Sbjct:   84 RPKHRHSSSVDGSGFFAAARKDAAASLAEVMEAKKAMTPEQLSDLAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQ 205          
BLAST of FC931865 vs. ExPASy Swiss-Prot
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 82/125 (65.60%), Postives = 93/125 (74.40%), Query Frame = 3
Query:  342 RSYHRHSNSMD---GFEVESILGDG----------VKKAVDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 677
            R  H+HS SMD     + E ++G             KKAV   +LAELAL+DPKRAKRI ANRQSAARSKERK+RY +ELERKVQTLQTEATTLSAQ+ +LQRDT+GLT EN ELKLRLQ MEQQ
Sbjct:  130 RPKHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQ 254          
The following BLAST results are available for this feature:
BLAST of FC931865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
POF21_ARATH6.583e-3568.60Probable transcription factor PosF21 OS=Arabidopsi... [more]
RF2B_ORYSJ2.502e-3466.39Transcription factor RF2b OS=Oryza sativa subsp. j... [more]
RF2A_ORYSJ2.502e-3465.60Transcription factor RF2a OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionC34202A06EF PostHarveN Citrus clementina cDNA clone C34202A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931865 ID=FC931865; Name=FC931865; organism=Citrus clementina; type=EST; length=710bp
ACCACCGTAGGGCCCACTCCGACACCTCCTTCCGCTTCGATGACTTCTTA
CTCTTCGACCCCTCCGACCTCGACCTCTCCGCCCTCGACCTCCCCTCGCC
CAATCCGACGCCGCCACGTGGCGTCCCCATGCCCCTAGATTCCTCCGAGG
ACTCCTCGTCCAACAGCCACGGCCAGAAGCAGCAGAAGCAAAGCCAAAAC
CCGCCGAAGCCTAAGCCTATCAACCACCTCCGTAGCCTCTCCGTTGACTC
TGATTTCTTCGACAGCTTGGGTTTGATCTCCCCCGCTTCAGGCGGCGGTG
CAGGAAACAGTGCGGCGGGGGCGGGAGGAGGAGGAGAGAAGAGAAGTTAC
CATAGGCATAGTAACTCAATGGATGGGTTTGAGGTAGAGTCTATCTTAGG
TGACGGTGTTAAGAAGGCCGTGGATCGTGATCGCCTCGCTGAACTCGCCC
TCATCGATCCCAAACGAGCTAAAAGGATTTTAGCTAATAGGCAATCAGCG
GCTCGTTCAAAGGAGAGGAAAATAAGATACACAAGTGAGCTAGAGAGGAA
AGTGCAGACACTTCAAACTGAAGCAACCACCTTGTCCGCACAGGTCACAA
TGTTGCAGAGAGACACTACTGGGCTAACAGCTGAGAATAAGGAACTCAAA
CTGCGGTTACAAGCTATGGAGCAACAGCACACCTAGAGATGCTTTAAATG
AGCATTAGGG
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