FC931867

Overview
NameFC931867
Unique NameFC931867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10831 contig Ccv1_Contig10831:539..1219. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931867 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.196e-14
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 1 
Query:  196 AGGSAAGSTPSWHMDDFLALPELNQNYSFMDNXXXXXXXXXXXXXXXXX-ILRSAEEELDDDE-CLGQVPEASWAVPQVPSPPTASGLYWPKNPQNQYDSAFVPDIHHHSQLNRTATRRRL 552
            + GS  GS P W +++   L + +Q+Y +M+N                  ++RSAEE+ +D+  CLG   E SWAVPQ+ SPPTASGL WPK+    + S FVPDI   +    ++  +R+
Sbjct:  176 SSGSTTGSIPQWQIEEIFGLTDFDQSYEYMENNGSSKADTSRRGDSDSSSMMRSAEEDGEDNNNCLGG--ETSWAVPQIQSPPTASGLNWPKH--FHHHSVFVPDITSSTPYTGSSPNQRV 292
The following BLAST results are available for this feature:
BLAST of FC931867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STHY_ARATH1.196e-1437.19Probable salt tolerance-like protein At1g78600 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC34202A09EF PostHarveN Citrus clementina cDNA clone C34202A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931867 ID=FC931867; Name=FC931867; organism=Citrus clementina; type=EST; length=681bp
GTAGGTCTTGAACCAGCTGATCCTGGTGCTTCATCTTCCTCTATTAAGTC
ACTATCTGGGGAAAACATTTTGGACATGAAATCCCATTCCCTGTCTAGAA
GGGACGCCCTGATGCCAGTGGCTGCTGAATGCAAAGAAGTTTTACCTGCT
AGTTCTGGTGGAGTTGGCGACTTTGCAATGAACAAAGTCTCATTTGCTGG
GGGGTCTGCAGCTGGAAGCACTCCGTCGTGGCACATGGATGATTTTCTAG
CACTTCCTGAGCTCAATCAAAATTATAGCTTCATGGATAATGGGTCATCT
AAGGCTGATAGTGGCAAGCGTGGAGACTCTGACAGCTCATCTATCTTAAG
ATCTGCTGAGGAAGAACTAGATGATGATGAGTGTTTGGGTCAGGTTCCAG
AGGCCTCCTGGGCTGTGCCACAAGTCCCTTCTCCTCCTACAGCATCTGGG
CTCTACTGGCCAAAAAATCCTCAGAACCAATATGATAGCGCTTTTGTGCC
TGACATACACCACCATTCTCAGCTTAATCGCACTGCCACAAGAAGGCGGT
TGCAGTAAACCTTTATTGGATGCCTCAAGTCTTCAATATCACCTTTTCAG
GTTTGCTTTTAGTCAATTATCCCCTCTGATCTGCTAAACTAAAATCGATG
ACTATCTGCATGGGATTGACTGGCGCTTTCC
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