FC931868

Overview
NameFC931868
Unique NameFC931868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6017 contig Ccv1_Contig6017:89..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 5.892e-73
Identity = 142/162 (87.65%), Postives = 153/162 (94.44%), Query Frame = 3
Query:  195 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            F V+A+AKDIAFDQ SR+AMQAGIDKL+DAVGLTLGPRGRNVVLDEFGS KVVNDGVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTAS+LAREIIKLGLL+VTSGANPVS+K+GIDKTV  LVEELEK  RP++G DDIKAVATISAGND+LIG
Sbjct:   43 FVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVATISAGNDELIG 204          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 2.924e-72
Identity = 141/163 (86.50%), Postives = 152/163 (93.25%), Query Frame = 3
Query:  195 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIGT 683
            F+VRA+ K+I+FDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGS KVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEKR RP++G  DIKAVATISAGND+L+GT
Sbjct:    2 FSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGT 164          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 3.819e-72
Identity = 139/163 (85.28%), Postives = 154/163 (94.48%), Query Frame = 3
Query:  195 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIGT 683
            F+VRA+ K+IAFDQ SRAA+QAGIDKL+D VGLTLGPRGRNVVLDEFGS KVVNDGVTIARAIEL + MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV GL+EEL+K+ RP++GRDDI+AVA+ISAGNDDLIG+
Sbjct:   42 FSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGS 204          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.476e-71
Identity = 141/162 (87.04%), Postives = 151/162 (93.21%), Query Frame = 3
Query:  195 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            F++RA+ K+IAFDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGS KVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEKR RP++G  DIKAVATISAGND+LIG
Sbjct:   41 FSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRPVKGGRDIKAVATISAGNDELIG 202          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.962e-68
Identity = 131/158 (82.91%), Postives = 150/158 (94.94%), Query Frame = 3
Query:  207 ASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            A AK+IAFDQ SRAA+QAG++KL++AVG+TLGPRGRNVVLDE+G+ KVVNDGVTIARAIELA+PMENAGAALIREVASKTNDSAGDGTTTA VLAREIIKLG+LSVTSGANPVSLK+GIDKTV GL+EELE++ RP++G  DIKAVA+ISAGND+LIG
Sbjct:    2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGTTTACVLAREIIKLGILSVTSGANPVSLKKGIDKTVQGLIEELERKARPVKGSGDIKAVASISAGNDELIG 159          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.707e-68
Identity = 131/147 (89.12%), Postives = 142/147 (96.60%), Query Frame = 3
Query:  243 RAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIGT 683
            R A+Q+GIDKL+DAVGLTLGPRGRNVVLDEFGS KVVN+GVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+KRGIDKTV GL+EELEK+ RP++GRDDIKAVA+ISAGND+LIGT
Sbjct:    1 RTALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARPVKGRDDIKAVASISAGNDELIGT 147          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.612e-54
Identity = 107/159 (67.30%), Postives = 136/159 (85.53%), Query Frame = 3
Query:  207 ASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            A AK+I FDQ SR  +QAGI+K++DAVG+TLGPRGRNVVL++ FG  +V+NDGV+I RAIEL DP+ENAGA LI+EVA +TND+AGDGTTTASVLARE+I  GL SVT+GANP+++KRG+DKT   LV +L++  +P++GRDDIK VA+ISAGND+ IG
Sbjct:   34 ADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIG 192          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.493e-47
Identity = 94/157 (59.87%), Postives = 129/157 (82.17%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK + FD+ SR A++ G++ L+DAV +TLGP+GRNVVL++ FG+ +++NDGVTIA+ +EL DP+ENAGA L+REVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANPV+L++GIDKT+  LV+E+E + +P+ G D I  VATISAGND  +G
Sbjct:    2 AKHVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAG-DAIAQVATISAGNDTEVG 157          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.237e-46
Identity = 95/157 (60.51%), Postives = 126/157 (80.25%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK I FD+ +R A++ G++ L+DAV +TLGP+GRNVVL++ FG+ ++VNDGVTIA+ IEL DP+EN GA LIREVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+SLKRG++KTV  LV+E+    +P+E    I  VATIS+GND+ IG
Sbjct:    2 AKMIVFDETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIG 158          
BLAST of FC931868 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 93/157 (59.24%), Postives = 125/157 (79.62%), Query Frame = 3
Query:  213 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSSKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRVRPIEGRDDIKAVATISAGNDDLIG 680
            AK + FD+ +R A++ GID L++AV +TLGP+GRNVVL++ FG+ +++NDGVTIA+ IEL + +EN GA LI+EVASKTND AGDGTTTA VLA+ ++K GL +V +G+NP++LKRG++KTV  LV ELEK  +P+EG   I  VA +SAGNDD IG
Sbjct:    2 AKQVVFDETARRALERGIDALANAVRVTLGPKGRNVVLEKKFGAPQIINDGVTIAKEIELENKLENTGAQLIKEVASKTNDVAGDGTTTACVLAQSLVKEGLKNVAAGSNPMNLKRGMEKTVRHLVAELEKVAKPVEGSQAIAQVAAVSAGNDDEIG 158          
The following BLAST results are available for this feature:
BLAST of FC931868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_PEA5.892e-7387.65RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA2.924e-7286.50RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH3.819e-7285.28RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA2.476e-7187.04RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT1.962e-6882.91RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO5.707e-6889.12RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE1.612e-5467.30RuBisCO large subunit-binding protein subunit alph... [more]
CH601_ACAM12.493e-4759.8760 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_GLOVI1.237e-4660.5160 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH601_GLOVI1.616e-4659.2460 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]

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Properties
Property NameValue
Genbank descriptionC34202A10EF PostHarveN Citrus clementina cDNA clone C34202A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931868 ID=FC931868; Name=FC931868; organism=Citrus clementina; type=EST; length=700bp
GGCAGCTTCTACTTGTTGTTGGTACCTTATCCGAAACAATTTCCCTCAGC
AGACGCTTCACTCCGTTTGGTTGATTGTTCGAAATGGCTTCTGCTAACGC
CCTTTCTTCGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGA
GGAGAGGAAATCAGAATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCT
GTTAGAGCGTCTGCCAAAGATATTGCTTTTGACCAGATCTCCAGGGCCGC
AATGCAGGCCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGG
GTCCAAGAGGGAGAAATGTTGTTCTGGATGAATTTGGAAGTTCGAAAGTG
GTTAATGATGGAGTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCAT
GGAAAATGCTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATG
ACTCTGCTGGTGATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATA
ATTAAACTAGGACTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTT
GAAGAGAGGGATTGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGA
AGAGGGTCAGGCCTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACC
ATCTCTGCTGGGAATGATGACCTGATTGGGACATGATCGCCGATGCNATT
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