FC931869

Overview
NameFC931869
Unique NameFC931869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15316 contig Ccv1_Contig15316:33..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 8.272e-94
Identity = 161/203 (79.31%), Postives = 183/203 (90.15%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            RGP KH KRL+APSHW+LDK+SGTYAP++S GPHKLR+ LPL++F+RNRLKYALNGREV AI+MQRLVKVDGKVRTD+T+PAGFMDVI LEKTGE+FRLVYD KGRF VHRI  EEA YKL KVKRVQ+GK GIP+LVTHD RTIRYPDP IKVNDTVK+D+ATGKI  FVKF++G ++M TGGRNMGRVG ITHRERH+GGF
Sbjct:    3 RGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGF 205          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 3.437e-93
Identity = 159/204 (77.94%), Postives = 179/204 (87.75%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            +RGP KH KR++AP HWLLDK+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL+KVDGKVRTD+T+P GFMDVIS+EKTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG  G+PFLVTHD RTIRYPDP IKVNDT+K+++ T KI  F+KFD+   +M TGGRNMGRVG I HRE H G F
Sbjct:    2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSF 205          

HSP 2 Score: 22.7126 bits (47), Expect = 3.437e-93
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  644 FHIVHVRDALD 676
            F I+HV+DALD
Sbjct:  205 FEIIHVKDALD 215          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 7.630e-93
Identity = 158/204 (77.45%), Postives = 179/204 (87.75%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            +RGP KH KR++AP HWLLDK+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL+KVDGKVRTD+T+P GFMDVIS++KTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG  G+PFLVTHD RTIRYPDP IKVNDT+K+++ T KI  F+KFD+   +M TGGRNMGRVG I HRE H G F
Sbjct:    2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSF 205          

HSP 2 Score: 22.7126 bits (47), Expect = 7.630e-93
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  644 FHIVHVRDALD 676
            F I+HV+DALD
Sbjct:  205 FEIIHVKDALD 215          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 9.954e-93
Identity = 158/204 (77.45%), Postives = 179/204 (87.75%), Query Frame = 3
Query:   36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            +RGP KH KR++AP HWLLDK+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL++VDGKVRTD+T+P GFMDVIS+EKTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG  G+PFLVTHD RTIRYPDP IKVNDT+K+++ T KI  F+KFD+   +M TGGRNMGRVG I HRE H G F
Sbjct:    2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSF 205          

HSP 2 Score: 22.7126 bits (47), Expect = 9.954e-93
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  644 FHIVHVRDALD 676
            F I+HV+DALD
Sbjct:  205 FEIIHVKDALD 215          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 331.257 bits (848), Expect = 3.253e-90
Identity = 155/203 (76.35%), Postives = 178/203 (87.68%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            RGP KH KRL+AP HWLLDK+SG YAP+ S GPHKLR+ LPLIVF+RNRLKYALNGREVKAI+MQR VKVDGKVRTDTTYPAGFMDVI+L+ T E+FRLVYD KGRF VHRI  EEA YKL KVK+VQLGK G+P++VTHD RTIRYPDP IKVNDTVK+D+A+GKI DF+KFD+G ++  TGGRN+GR+G I H+ERHDGGF
Sbjct:    3 RGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGF 205          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 1.785e-88
Identity = 148/203 (72.91%), Postives = 176/203 (86.70%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G F
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSF 205          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 324.709 bits (831), Expect = 3.045e-88
Identity = 148/203 (72.91%), Postives = 175/203 (86.21%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV++  +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G F
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSF 205          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 323.553 bits (828), Expect = 6.783e-88
Identity = 147/203 (72.41%), Postives = 175/203 (86.21%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI +EEA+YKLCKV++  +G  GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G F
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITSEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSF 205          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 2.578e-87
Identity = 147/203 (72.41%), Postives = 174/203 (85.71%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI++F+KFD+G + M  GG N+GRVGVIT+RERH G F
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSF 205          
BLAST of FC931869 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANPA (40S ribosomal protein S4, Y isoform 1 OS=Pan paniscus GN=RPS4Y1 PE=3 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 2.578e-87
Identity = 147/203 (72.41%), Postives = 174/203 (85.71%), Query Frame = 3
Query:   39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGF 647
            RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI++F+KFD+G + M  GG N+GRVGVIT+RERH G F
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSF 205          
The following BLAST results are available for this feature:
BLAST of FC931869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4_YARLI8.272e-9479.3140S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4A_SCHPO3.437e-9377.9440S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4C_SCHPO7.630e-9377.4540S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4B_SCHPO9.954e-9377.4540S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4_YEAST3.253e-9076.3540S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_CHICK1.785e-8872.9140S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]
RS4_XENTR3.045e-8872.9140S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_XENLA6.783e-8872.4140S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4Y1_PANTR2.578e-8772.4140S ribosomal protein S4, Y isoform 1 OS=Pan trogl... [more]
RS4Y1_PANPA2.578e-8772.4140S ribosomal protein S4, Y isoform 1 OS=Pan panis... [more]

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Properties
Property NameValue
Genbank descriptionC34202A11EF PostHarveN Citrus clementina cDNA clone C34202A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931869 ID=FC931869; Name=FC931869; organism=Citrus clementina; type=EST; length=719bp
GGACCACCTAACCTTCAGTCGACAAATCAGTCAAAATGCGCGGCCCCGGA
AAGCACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGACAAAAT
GTCCGGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGG
ACTGCCTTCCCCTGATTGTCTTCATCCGTAATCGTCTCAAGTACGCCCTG
AACGGTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGA
CGGCAAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCA
TCTCCCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAG
GGTCGCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCT
CTGCAAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGG
TTACGCACGATGCGCGAACCATCCGCTACCCCGACCCTGCCATCAAGGTC
AACGACACCGTCAAGGTTGACATTGCCACTGGCAAGATCCTCGACTTCGT
CAAGTTCGACTCTGGTGTTGTCATCATGGCCACTGGTGGTCGCAACATGG
GTCGTGTTGGTGTCATCACTCACCGTGAGCGTCACGACGGTGGTTTCACA
TCGTCCACGTTCGCGATGCTCTGGACACCAGTTCGCTACCCGTGAGTCCA
CGTCTTCGTCATTGGACAG
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