FC931876

Overview
NameFC931876
Unique NameFC931876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931876 vs. ExPASy Swiss-Prot
Match: TM120_DICDI (Transmembrane protein 120 homolog OS=Dictyostelium discoideum GN=tmem120 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  244 FVKMFIGPINVRASRKDVQLKVKEEYNSYRDRTAXXXXXXXXXXXXXRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEI 579
            FV++F+G +NV+  R++ + ++K+EY  ++ +T                        +F    +Q WLL+ Y  LALRENIL +NGS I+PWWI HHY ++  +L +L + +
Sbjct:  128 FVRLFLGQVNVKHMRENEKFRLKQEYEKFKKKTNPQFILFVVLLLLYPQ-------SSFVTTSWQIWLLYYYITLALRENILLVNGSSIKPWWIMHHYLSIAGSLTNLLFPL 232          
BLAST of FC931876 vs. ExPASy Swiss-Prot
Match: T120A_RAT (Transmembrane protein 120A OS=Rattus norvegicus GN=Tmem120a PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 49/174 (28.16%), Postives = 81/174 (46.55%), Query Frame = 1
Query:  151 ADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYR-DRTAXXXXXXXXXXXXXRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 669
            A +LE  +++ Q L +D +A  +LP K  G ++ + +G +NV    K  +   K+EY  ++   T               S + D          +   L++ Y  L +RE+IL  NGS I+ WW++HHY +  ++ V LTW     P+    Q+    FL ++M Q     LQ
Sbjct:   80 AQELESQIKERQGLFFDMEA--YLPKK-NGLYLSLVLGNVNVTLLSKQAKFAYKDEYEKFKLYLTIILIVISFTCRFLLNSRVTDAA--------FNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTW-----PDGLMYQKFRNQFLSFSMYQSFVQFLQ 237          
BLAST of FC931876 vs. ExPASy Swiss-Prot
Match: T120A_MOUSE (Transmembrane protein 120A OS=Mus musculus GN=Tmem120a PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 49/174 (28.16%), Postives = 81/174 (46.55%), Query Frame = 1
Query:  151 ADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYR-DRTAXXXXXXXXXXXXXRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 669
            A +LE  +++ Q L +D +A  +LP K  G ++ + +G +NV    K  +   K+EY  ++   T               S + D          +   L++ Y  L +RE+IL  NGS I+ WW++HHY +  ++ V LTW     P+    Q+    FL ++M Q     LQ
Sbjct:   80 AQELENQMKERQGLFFDMEA--YLPKK-NGLYLSLVLGNVNVTLLSKQAKFAYKDEYEKFKLYLTIILIVISFTCRFLLNSRVTDAA--------FNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTW-----PDGLMYQKFRNQFLSFSMYQSFVQFLQ 237          
BLAST of FC931876 vs. ExPASy Swiss-Prot
Match: T120A_HUMAN (Transmembrane protein 120A OS=Homo sapiens GN=TMEM120A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 49/174 (28.16%), Postives = 81/174 (46.55%), Query Frame = 1
Query:  151 ADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYR-DRTAXXXXXXXXXXXXXRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 669
            A +LE  +++ Q L +D +A  +LP K  G ++ + +G +NV    K  +   K+EY  ++   T               S + D          +   L++ Y  L +RE+IL  NGS I+ WW++HHY +  ++ V LTW     P+    Q+    FL ++M Q     LQ
Sbjct:   80 AQELENQMKERQGLFFDMEA--YLPKK-NGLYLSLVLGNVNVTLLSKQAKFAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAA--------FNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTW-----PDGLMYQKFRNQFLSFSMYQSFVQFLQ 237          
BLAST of FC931876 vs. ExPASy Swiss-Prot
Match: T120A_BOVIN (Transmembrane protein 120A OS=Bos taurus GN=TMEM120A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 49/174 (28.16%), Postives = 81/174 (46.55%), Query Frame = 1
Query:  151 ADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPINVRASRKDVQLKVKEEYNSYR-DRTAXXXXXXXXXXXXXRSWIWDGCLPAFPVQLYQAWLLFLYTGLALRENILRINGSDIRPWWIYHHYCAMLMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQ 669
            A +LE  +++ Q L +D +A  +LP K  G ++ + +G +NV    K  +   K+EY  ++   T               S + D          +   L++ Y  L +RE+IL  NGS I+ WW++HHY +  ++ V LTW     P+    Q+    FL ++M Q     LQ
Sbjct:   80 ARELENQIKERQGLFFDMEA--YLPKK-NGLYLSLVLGNVNVTLLSKQAKFAYKDEYEKFKLYLTIILILISFTCRFLLNSRVTDAA--------FNFLLVWYYCTLTIRESILINNGSRIKGWWVFHHYVSTFLSGVMLTW-----PDGLMYQKFRNQFLSFSMYQSFVQFLQ 237          
The following BLAST results are available for this feature:
BLAST of FC931876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TM120_DICDI1.032e-1433.93Transmembrane protein 120 homolog OS=Dictyostelium... [more]
T120A_RAT3.671e-1228.16Transmembrane protein 120A OS=Rattus norvegicus GN... [more]
T120A_MOUSE3.671e-1228.16Transmembrane protein 120A OS=Mus musculus GN=Tmem... [more]
T120A_HUMAN3.671e-1228.16Transmembrane protein 120A OS=Homo sapiens GN=TMEM... [more]
T120A_BOVIN6.262e-1228.16Transmembrane protein 120A OS=Bos taurus GN=TMEM12... [more]
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Properties
Property NameValue
Genbank descriptionC34202B06EF PostHarveN Citrus clementina cDNA clone C34202B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931876 ID=FC931876; Name=FC931876; organism=Citrus clementina; type=EST; length=731bp
GCAGCAACGTTGATAAATAGGACGTCAAGCGAGGAGCAATCCCTGAGGCA
GCGCGCTCTTTCTTTGGACTCTAACATTCGTCGTTTGCGTTCTCTGCTTC
ATTCTTCCATCTCCAGCACCAACAACCTTCTTCGTTTTGATTCTAAGTTA
GCTGACAAGCTTGAAGAAGATTTACAGAAAGCTCAATGTTTGATCTATGA
TGGCGACGCCTCTGCTTTCCTTCCTAGCAAAGCTCAGGGTGCTTTTGTCA
AAATGTTTATCGGTCCAATTAATGTGCGAGCCTCTCGCAAGGACGTCCAG
TTGAAGGTTAAAGAGGAGTATAACAGTTACAGAGATAGAACTGCCCTTTT
GTTCCTTCTTTTTCCATCAACACTACTCATTTTGAGATCTTGGATCTGGG
ATGGTTGCTTGCCTGCTTTTCCTGTTCAGCTCTACCAGGCTTGGCTGTTG
TTTCTCTACACCGGTTTGGCCTTGCGAGAGAACATTTTGAGAATCAATGG
AAGTGATATTCGCCCTTGGTGGATTTATCATCACTATTGTGCTATGCTTA
TGGCGCTTGTTAGTCTGACATGGGAGATTAAAGGACAGCCAAATTGTGCA
CAAAAGCAGAGAGGAGTACAACTTTTCCTTCAATGGGCTATGATGCAAGG
AGTTGCCATGCTTCTGCAAACAGATATCACGTCAAGACTATATACTCGTA
TGCCCTGGGAAAGCGAAGAGATGGATGTGTC
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