FC931877

Overview
NameFC931877
Unique NameFC931877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13855 contig Ccv1_Contig13855:116..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931877 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 58/133 (43.61%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  278 PLPSTRFCQIRCRANRSGNSAYSPLNSGSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVIGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLQIHMLILKTR 676
            P+ S        RA   G  +    N+ +N  +   T M    PGCDY HWLIVM+ P     T++QMID Y+ TLA V+GS EEAKK +Y  S   Y GF C + EETS K +GLPGVL+VL    + +K +
Sbjct:   42 PIKSRSAAYPTVRALTDGEYSSRRNNNNNNSGEERETIM---LPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNK 171          
BLAST of FC931877 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  326 SGNSAYSPLNSGS-NFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLAQVIGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVL 646
            S  +  S LN  + N+S+RPP E   L  GCD+EHWL+V++ P GE  T+ ++ID YIKTLAQ++GSE+EA+ KIY+VS   Y+ FG  + E+ S+KL+ L  V +VL
Sbjct:   66 STQATSSSLNDPNPNWSNRPPKETI-LLDGCDFEHWLVVVEPPQGE-PTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVL 171          
The following BLAST results are available for this feature:
BLAST of FC931877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DAG_ANTMA2.775e-2243.61DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
UMP1_ARATH8.928e-2149.07Uncharacterized protein At3g15000, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionC34202B07EF PostHarveN Citrus clementina cDNA clone C34202B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931877 ID=FC931877; Name=FC931877; organism=Citrus clementina; type=EST; length=698bp
GGCTATCTTCATTTCTTATTTCAAAAACCCTCGTTTCTTTCTTCTATCAT
CTTCTTCTTCGATCTCCCATAAATCCTCGTCAGAAAAAACAATGGCTCAA
ACCCTAACACGGGCCATTACGGCTCTCTCCACCCGCAGCTCAAGACTGTC
CCTCTTCAGCTCAAAGCGCCTGCTTTCCACAAACACCACTACCGTCACCG
CCCCATCTCCGCTCCCCTCTCTGCTCTTCAGCCGTCGGGCCGCAGCCCCG
CTCTCCCATGCGGTGGGGTTGATTTCCCCCCTACCATCCACTCGCTTCTG
CCAAATACGGTGCCGTGCCAACCGCTCTGGAAACTCAGCCTACTCCCCGC
TCAACTCCGGGTCCAACTTCAGCGACCGCCCTCCCACCGAGATGGCCCCG
CTATTCCCCGGCTGTGACTACGAGCACTGGCTTATCGTCATGGACAAGCC
CGGCGGCGAGGGCGCCACTAAACAGCAGATGATTGATTGTTATATCAAAA
CCCTTGCTCAGGTGATCGGCAGTGAGGAAGAGGCAAAGAAGAAAATTTAC
AATGTTTCGTGTGAGAGGTATTTTGGATTCGGCTGTGAGCTTGATGAGGA
GACCTCTAATAAGCTAGAAGGCTTGCCGGGTGTTTTGTTTGTGCTTCAGA
TTCATATGTTGATCCTGAAAACAAGACTATGGTGCTGAGCTGTTTGTG
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