FC931878

Overview
NameFC931878
Unique NameFC931878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15405 contig Ccv1_Contig15405:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: T112A_ARATH (TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 64/115 (55.65%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  332 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYA-XXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673
            MRL+THNMLS NIKGV +GFPL IE   VIEK+VDFNPDF++++F KIEW+ALV+ +RSMGYA                 FL+K               VCPETGRKFPVNKGIP
Sbjct:    1 MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSMGYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIP 115          
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: T112B_ARATH (TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 61/115 (53.04%), Postives = 69/115 (60.00%), Query Frame = 2
Query:  332 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYA-XXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673
            MRL+ HNMLS NIKGV N FPL IE EKV  K+VDFNPDFL+ +F KI+W+ALV  +RSM Y                  FLRKF              VCPETGRKF V+KGIP
Sbjct:    1 MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSMEYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIP 115          
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: TR112_MOUSE (tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 2
Query:  332 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673
            M+LLTHN+LSS+++GV   GFPL ++  +V    V+FNP+F+  + PK+EW ALVQA+ ++  A                FLRK                CPE+GR FP+++GIP
Sbjct:    1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADTLNLA-EVPKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIP 114          
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: TR112_BOVIN (tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  332 MRLLTHNMLSSNIKGVA-NGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673
            MRLLTHN+LSS+++GV   GFPL ++  +V    V+FNPDF+  + PK+EW AL++A+  + +                 FLRK                CPE+GR FP+++GIP
Sbjct:    1 MRLLTHNLLSSHVRGVGPRGFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADHL-HLIQVPKEPIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPESGRVFPISRGIP 114          
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: TR112_HUMAN (tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  332 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673
            M+LLTHN+LSS+++GV + GFPL ++  +V    V+FNP+F+  + PK+EW A ++A+ ++                   FLR                 CPE+GR FP+++GIP
Sbjct:    1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADNL-RLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIP 114          
The following BLAST results are available for this feature:
BLAST of FC931878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
T112A_ARATH5.628e-2855.65TRM112-like protein At1g22270 OS=Arabidopsis thali... [more]
T112B_ARATH1.695e-2453.04TRM112-like protein At1g78190 OS=Arabidopsis thali... [more]
TR112_MOUSE4.942e-1639.13tRNA methyltransferase 112 homolog OS=Mus musculus... [more]
TR112_BOVIN1.438e-1538.26tRNA methyltransferase 112 homolog OS=Bos taurus G... [more]
TR112_HUMAN2.998e-1334.78tRNA methyltransferase 112 homolog OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionC34202B08EF PostHarveN Citrus clementina cDNA clone C34202B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931878 ID=FC931878; Name=FC931878; organism=Citrus clementina; type=EST; length=688bp
GCTCCAATTTTAGTTGCACTTTTTATCATTTTGCTTAAAACTGAAATCAA
GTACGATTAAGATAGTGAGTGTGTAACCAGATATCCGATGCAAGCAAGTA
TTAAGTAATTAGCCGGGAAATCAAATTAAAAGTTATAAATCAATTTTGGT
CCGAAACTACCCATATGGCCCCGCTCTGGAAGTTAGAAATCCAGTAAGGC
TATTTTGGTCATTTCGTTCACTACGGAAAATAACAAGACCGAGAGCAGGC
CGTGCTGCCGCCACTTTGTTTAGGGATATGAAGTAGTGGCAGGCGCTCAC
AGGGACAGCGAGGGGTTAGAGAAAAAGGAAGATGAGGCTACTAACACACA
ACATGTTATCATCTAACATCAAGGGAGTCGCCAACGGCTTCCCTCTCCTG
ATCGAGGTGGAGAAAGTCATCGAAAAGCAGGTGGATTTCAACCCCGATTT
TCTAAAAAATATATTCCCGAAGATCGAGTGGCAGGCGCTTGTCCAGGCGT
CGCGGTCCATGGGCTACGCTGAGCTCCCCGAGGAGTCGCCCGAATCGTCG
ATGCTTGACTCGGACGATTTTTTGAGGAAGTTCCACCATGCGCTCCTGGA
GCTGCATCTGGAAGAGGGTGCTCTGGTTTGTCCTGAGACAGGGAGAAAGT
TTCCGGTTAATAAGGGGATTCCTATATGCTGCTCCATG
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