FC931878
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: T112A_ARATH (TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28 Identity = 64/115 (55.65%), Postives = 75/115 (65.22%), Query Frame = 2 Query: 332 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYA-XXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673 MRL+THNMLS NIKGV +GFPL IE VIEK+VDFNPDF++++F KIEW+ALV+ +RSMGYA FL+K VCPETGRKFPVNKGIP Sbjct: 1 MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSMGYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIP 115
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: T112B_ARATH (TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24 Identity = 61/115 (53.04%), Postives = 69/115 (60.00%), Query Frame = 2 Query: 332 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYA-XXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673 MRL+ HNMLS NIKGV N FPL IE EKV K+VDFNPDFL+ +F KI+W+ALV +RSM Y FLRKF VCPETGRKF V+KGIP Sbjct: 1 MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSMEYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIP 115
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: TR112_MOUSE (tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16 Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 2 Query: 332 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673 M+LLTHN+LSS+++GV GFPL ++ +V V+FNP+F+ + PK+EW ALVQA+ ++ A FLRK CPE+GR FP+++GIP Sbjct: 1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADTLNLA-EVPKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIP 114
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: TR112_BOVIN (tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 2 Query: 332 MRLLTHNMLSSNIKGVA-NGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673 MRLLTHN+LSS+++GV GFPL ++ +V V+FNPDF+ + PK+EW AL++A+ + + FLRK CPE+GR FP+++GIP Sbjct: 1 MRLLTHNLLSSHVRGVGPRGFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADHL-HLIQVPKEPIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPESGRVFPISRGIP 114
BLAST of FC931878 vs. ExPASy Swiss-Prot
Match: TR112_HUMAN (tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13 Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 2 Query: 332 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGYAXXXXXXXXXXXXXXXXFLRKFXXXXXXXXXXXXXXVCPETGRKFPVNKGIP 673 M+LLTHN+LSS+++GV + GFPL ++ +V V+FNP+F+ + PK+EW A ++A+ ++ FLR CPE+GR FP+++GIP Sbjct: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADNL-RLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIP 114 The following BLAST results are available for this feature:
BLAST of FC931878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931878 ID=FC931878; Name=FC931878; organism=Citrus clementina; type=EST; length=688bpback to top |