FC931881

Overview
NameFC931881
Unique NameFC931881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7083 contig Ccv1_Contig7083:341..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.945e-50
Identity = 115/221 (52.04%), Postives = 142/221 (64.25%), Query Frame = 2
Query:   74 MQSAAAFTAAPNLPLLKPRRLSANHAPGHVVLCSKRHDSNVVPPSPSAFPPIRRXXXXXXXXXXMFRPWTAVP-LRDP--DTTG-RSQATAVPESAGGEEHQTTELARKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNLY-RPKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFSVLLSAMF 721
            MQS+A F+A+P+LPLLKP RLS  H        +   + +V PP+  + PP+ R            R W+ +P +  P  DT   ++ ATAVPE   G    T    + +E+ LL  +WY FNI FNIYNKQVLK    P+TVT  QF VG+      W  NLY RPK+S+ QLAAILPLA+VHTLGNLFTNMSLG+V+VSFTHTIKA EPFFSV+LSAMF
Sbjct:    1 MQSSAVFSASPSLPLLKPGRLSLRHP------VTASSNLSVSPPNVVSVPPLPRRSWRLASSDSPLRAWSGLPSVSSPSLDTNRFKTAATAVPEEGEGSGKMT----KVLELGLLFAMWYLFNIYFNIYNKQVLKALHAPMTVTLVQFAVGSVLITFMWALNLYKRPKISAAQLAAILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVVLSAMF 211          
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 46/133 (34.59%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  317 RSQATAVPESAGGEEHQTTELARKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNLYR-PKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFSVLLS 712
            RS+   + + A   E ++ E A+K+++ +    W+  N++FNIYNK+VL  Y +P   +T     G+      W   +   PK        + P+A+ HT+G++   +S+ +VAVSFTH IK+ EP FSVL+S
Sbjct:   72 RSEPHPIGDDAAAAETKS-EAAKKLKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLMMLISWAVGIVETPKTDFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVS 203          
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  395 VLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNL-YRPKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFSVLLS 712
            +LLLM  WYF N+IFNI NK++   + +P  V+     VG       W+  L  R  V+S  L  ++P+A+ H +G++ +N+S   VAVSFTHTIKA EPFF+   S
Sbjct:  107 ILLLM--WYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLVSWSVGLPKRAPVNSDILKVLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNASAS 211          
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  413 LWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNL-YRPKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFSVLLS 712
            +WYF N+IFNI NK++   + +P  V+     VG       W   L  R  + STQL  + P+A  H LG++ +N+S   V VSFTHT+KA EPFF+   S
Sbjct:  118 MWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWGVGLPKRAPIDSTQLKLLTPVAFCHALGHVTSNVSFAAVRVSFTHTVKALEPFFNAAAS 218          
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.835e-17
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  413 LWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNL-YRPKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFSVLLS 712
            +WYF N+IFNI NK++   + +P  V+     VG       WT  L  R  V S  L  ++P+   H LG++ +N+S   VAVSFTHTIKA EPFF+   S
Sbjct:  111 MWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLGSWTVGLPKRAPVDSNILKLLIPVGFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAAS 211          
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 50/143 (34.97%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  314 GRSQATAVPESAGGEEHQTTELARKIEVL-----LLMGL----WYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNL-YRPKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFSVLLS 712
            G S     P +AGG +    E    +        L  G     WYF N+IFNI NK++   + +P  V+     VG       WT  L  R  +    L  ++P+A+ H LG++ +N+S   VAVSFTHT+KA EPFF+   S
Sbjct:   64 GASLLRPCPATAGGNDSAGEEKVAPVGFFSRYPALTTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWTVGLPKRAPIDGNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAAS 206          
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  290 PLRDPDTTGRSQATAVPE---SAGGEEHQTTELARKIEVLL---LMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNL-YRPKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFSVLLS 712
            P++      R + TAV     ++G      T    K   L+      +WYF N+IFNI NK++   + +P  V+     VG       W+  L  R  + S  L  ++P+A+ H +G++ +N+S   VAVSFTHTIKA EPFF+   S
Sbjct:   61 PVQTGPVCSRREKTAVQPCRAASGSSGEAKTGFLEKYPALVTGSFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVGLPKRAPMDSKLLKLLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNAAAS 208          
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.407e-16
Identity = 41/115 (35.65%), Postives = 66/115 (57.39%), Query Frame = 2
Query:  380 ARKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNLY-RPKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFSVLLSAMF 721
            A+K+++ +    W+  N++FNIYNK+VL  + +P   +T     G+      W   +   PK        + P+A+ HT+G++   +S+ +VAVSFTH IK+ EP FSVL+S  F
Sbjct:   92 AQKLKIGIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMLVSWATRIADAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFF 206          
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  332 AVPESAGGEEHQTTELARKIEVLL---LMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNL-YRPKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFS 700
            A  ESAG  E ++     K   L+      +WYF N+IFNI NK++   + +P  V+     VG       W+  L  R  ++ T L  + P+AL H +G++ +N+S   VAVSF HTIKA EPFFS
Sbjct:   86 AAAESAG--EAKSVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSLIHLVVGVVYCLISWSVGLPKRAPINGTLLKLLFPVALCHGIGHITSNVSFAAVAVSFAHTIKALEPFFS 210          
BLAST of FC931881 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  413 LWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNL-YRPKVSSTQLAAILPLALVHTLGNLFTNMSLGEVAVSFTHTIKATEPFFSVLLS 712
            +WYF N+IFNI NK++   + +P  V+     VG       W   L  R  + S  L  ++P+A  H LG++ +N+S   VAVSFTHTIK+ EPFF+   S
Sbjct:  112 MWYFLNVIFNILNKKIYNYFPYPYFVSAIHLAVGVVYCLGGWAVGLPKRAPMDSNLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKSLEPFFNAAAS 212          
The following BLAST results are available for this feature:
BLAST of FC931881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TPT2_BRAOB1.945e-5052.04Triose phosphate/phosphate translocator, non-green... [more]
GPT1_ARATH3.348e-1834.59Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
TPT1_BRAOB3.702e-1742.99Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU4.835e-1741.58Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR4.835e-1742.57Triose phosphate/phosphate translocator, chloropla... [more]
TPT_PEA6.314e-1734.97Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SPIOL1.407e-1633.78Triose phosphate/phosphate translocator, chloropla... [more]
GPT2_ARATH1.407e-1635.65Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
TPT_MAIZE1.837e-1638.58Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR2.399e-1640.59Triose phosphate/phosphate translocator, chloropla... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202B11EF PostHarveN Citrus clementina cDNA clone C34202B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931881 ID=FC931881; Name=FC931881; organism=Citrus clementina; type=EST; length=721bp
GGCTCATTTTTCAATACGCAGCGCTTTGCTTCTTTTCGCTTCGATTTGAT
TTCATTTTCAGGTCTCCGAAAATATGCAAAGCGCTGCTGCATTCACGGCC
GCCCCTAATCTTCCTCTCCTTAAGCCTCGAAGATTATCCGCAAACCACGC
GCCCGGCCACGTCGTTCTCTGTTCTAAACGACACGATTCCAATGTCGTCC
CCCCTTCTCCCTCTGCCTTCCCGCCTATCCGCCGATCCTGGTCCCTCTCC
TCCACTCCTTCCTCCATGTTCCGGCCTTGGACCGCCGTGCCGCTGCGGGA
TCCCGATACCACGGGCCGTTCTCAAGCCACGGCCGTGCCGGAGAGCGCCG
GCGGTGAGGAACACCAGACGACTGAATTGGCTAGGAAGATAGAAGTTCTC
CTGCTGATGGGCTTGTGGTACTTCTTCAATATCATCTTCAATATTTACAA
CAAACAGGTGCTGAAGGTTTATCGCTTTCCAGTAACCGTAACGACTTGTC
AGTTTGGCGTGGGAACCGTACTGGTTTTGTTGTTGTGGACTTTTAATTTG
TATAGACCAAAAGTTAGCAGCACCCAGCTTGCAGCTATTTTGCCGCTCGC
ATTGGTGCACACGTTGGGTAACCTCTTTACTAATATGAGTCTTGGGGAAG
TGGCTGTTTCATTCACTCACACGATTAAGGCTACGGAGCCATTCTTCTCT
GTTCTCCTATCTGCTATGTTT
back to top