FC931888

Overview
NameFC931888
Unique NameFC931888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:3..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 3.349e-98
Identity = 183/220 (83.18%), Postives = 190/220 (86.36%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIARPK------QRLLNTR 719
            MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLTLQRKRARIAEKK+R+A+ K      Q+LL +R
Sbjct:    1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASR 220
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 356.295 bits (913), Expect = 9.745e-98
Identity = 182/220 (82.73%), Postives = 189/220 (85.91%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIARPK------QRLLNTR 719
            MKFN+ANPTTGCQKKLEIDDDQKLRAFFDKR+SQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTLQRKRARIA+KK+RIA+        Q+LL +R
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASR 220
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 349.747 bits (896), Expect = 9.121e-96
Identity = 178/220 (80.91%), Postives = 188/220 (85.45%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIARPK------QRLLNTR 719
            MKFN+ANPTTGCQKKLEIDDDQKLRAF+DKRISQEVSGDALGEEFKGYVFKI GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTLQRKRARIA+KK++IA+        Q+LL +R
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASR 220
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.018e-62
Identity = 128/209 (61.24%), Postives = 153/209 (73.21%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLQRKRARIAEKKQRIARPKQ 701
            MK NI+ P TGCQK +E+DD++KLR F+DKRIS E+S D LG+E+KGYV +I GG DKQGFPMKQGVLT  RVRLLL +   C+                 CIV  +LSVL+LVI+KKGE D+PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   RR    + GKK  SKAPKIQRLVTP+ LQRKRAR+A KK+R+ + ++
Sbjct:    1 MKLNISYPATGCQKLIEVDDEKKLRPFYDKRISAELSADCLGDEWKGYVVRISGGNDKQGFPMKQGVLTATRVRLLLDKNHSCY--RPRRTGERKRKSVRGCIVDSNLSVLSLVIIKKGEQDIPGLTDKTIPRRLGPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKRE 205
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.736e-62
Identity = 128/208 (61.54%), Postives = 151/208 (72.60%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIARPKQ 701
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  + K+
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKE 204
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.736e-62
Identity = 128/208 (61.54%), Postives = 151/208 (72.60%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIARPKQ 701
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  + K+
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKE 204
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.736e-62
Identity = 128/208 (61.54%), Postives = 151/208 (72.60%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIARPKQ 701
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  + K+
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKE 204
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.736e-62
Identity = 128/208 (61.54%), Postives = 151/208 (72.60%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIARPKQ 701
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  + K+
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKE 204
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.268e-62
Identity = 131/209 (62.68%), Postives = 152/209 (72.73%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLQRKRARIAEKKQRIARPKQ 701
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV+ DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV    R    K GKK  +KAPKIQRLVTP  LQ KR RIA KKQR  + K+
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRKPLNKDGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKE 204
[Close]
BLAST of FC931888 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.274e-61
Identity = 125/208 (60.10%), Postives = 150/208 (72.12%), Query Frame = 3 
Query:   78 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIARPKQ 701
            MK NI+ P TGCQK +E+DD++ +R F++KR++ EV+ D+LGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR  + K+
Sbjct:    1 MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKE 204
The following BLAST results are available for this feature:
BLAST of FC931888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_ASPOF3.349e-9883.1840S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS62_ARATH9.745e-9882.7340S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH9.121e-9680.9140S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_APLCA1.018e-6261.2440S ribosomal protein S6 OS=Aplysia californica GN... [more]
RS6_RAT1.736e-6261.5440S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE1.736e-6261.5440S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA1.736e-6261.5440S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN1.736e-6261.5440S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN2.268e-6262.6840S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_CHICK3.274e-6160.1040S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]

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Properties
Property NameValue
Genbank descriptionC34202C06EF PostHarveN Citrus clementina cDNA clone C34202C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931888 ID=FC931888; Name=FC931888; organism=Citrus clementina; type=EST; length=731bp
GAATAAGGAGCATTTGTGCAGCAGCAGCGAGAGAGCCGAAGAACTCCACT
GGGTTAGTCTGATAGCTGCAGAACAAAATGAAGTTCAATATTGCAAATCC
CACCACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACTCC
GAGCATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTCTT
GGGGAGGAGTTCAAAGGTTATGTCTTTAAGATAATGGGAGGCTGTGACAA
GCAAGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCGTC
TTCTGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAGAT
GGAGAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGATCT
CTCAGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCCTG
GACTTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCTCA
AAGATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAGTA
TGTCAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGTTA
GCAAGGCTCCTAAAATTCAGAGGCTGGTGACTCCTTTGACTTTGCAGAGG
AAGCGCGCCAGAATTGCTGAGAAGAAGCAGAGAATTGCCAGGCCCAAGCA
GAGGCTGCTGAATACCAGAGCTCCTTGCTAC
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